Variant report

Variant	rs9470473
Chromosome Location	chr6:37069925-37069926
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:37069677..37071313-chr6:37076880..37078736,2	MCF-7	breast:
2	chr6:37068856..37071851-chr6:37091026..37093597,3	K562	blood:
3	chr6:37068687..37073777-chr6:37134498..37141363,15	MCF-7	breast:
4	chr6:37050127..37052554-chr6:37069318..37071182,2	MCF-7	breast:
5	chr6:37069334..37071382-chr6:37103565..37107172,5	MCF-7	breast:
6	chr6:37021819..37031002-chr6:37065955..37074085,20	MCF-7	breast:
7	chr6:37059067..37063472-chr6:37069651..37072705,4	K562	blood:
8	chr6:37068352..37070883-chr6:37071003..37073055,2	MCF-7	breast:
9	chr6:37068309..37074081-chr6:37136012..37144014,7	K562	blood:
10	chr6:37038083..37040728-chr6:37067671..37070819,3	MCF-7	breast:
11	chr6:37060206..37065655-chr6:37067548..37072519,8	K562	blood:
12	chr6:37017932..37019663-chr6:37069414..37072213,2	K562	blood:
13	chr6:37069426..37072676-chr6:37136680..37139369,3	MCF-7	breast:
14	chr6:36989372..36991434-chr6:37069040..37071610,2	MCF-7	breast:
15	chr6:37069809..37073180-chr6:37101170..37104967,5	MCF-7	breast:
16	chr6:37021501..37023622-chr6:37068699..37070344,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000216412	Chromatin interaction
ENSG00000137193	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11962008	1.00[EUR][1000 genomes]
rs11970283	1.00[ASN][1000 genomes]
rs16889467	1.00[ASN][1000 genomes]
rs2183000	1.00[ASN][1000 genomes]
rs2395665	1.00[ASN][1000 genomes]
rs2395666	1.00[ASN][1000 genomes]
rs55994992	1.00[ASN][1000 genomes]
rs58083075	1.00[ASN][1000 genomes]
rs58663807	1.00[ASN][1000 genomes]
rs59214897	1.00[ASN][1000 genomes]
rs60679206	1.00[ASN][1000 genomes]
rs73730532	1.00[EUR][1000 genomes]
rs9462253	1.00[ASN][1000 genomes]
rs9462260	1.00[ASN][1000 genomes]
rs9462262	1.00[ASN][1000 genomes]
rs9470455	1.00[ASN][1000 genomes]
rs9470466	1.00[ASN][1000 genomes]
rs9470468	1.00[ASN][1000 genomes]
rs9470471	1.00[ASN][1000 genomes]
rs9470472	1.00[ASN][1000 genomes]
rs9470474	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030015	chr6:36818510-37104446	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37052200-37070000	Weak transcription	Right Atrium	heart
2	chr6:37061400-37070000	Weak transcription	Pancreas	Pancrea
3	chr6:37063200-37070000	Weak transcription	Esophagus	oesophagus
4	chr6:37063600-37071000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr6:37064200-37070000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:37064200-37071200	Weak transcription	Small Intestine	intestine
7	chr6:37064400-37070000	Weak transcription	Psoas Muscle	Psoas
8	chr6:37066800-37070000	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr6:37066800-37070000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr6:37067600-37070000	Weak transcription	HMEC	breast
11	chr6:37067800-37070000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr6:37068400-37070000	Enhancers	Primary B cells from peripheral blood	blood
13	chr6:37068600-37070000	Enhancers	Fetal Muscle Leg	muscle
14	chr6:37068600-37070200	Enhancers	GM12878-XiMat	blood
15	chr6:37068800-37070000	Enhancers	Duodenum Mucosa	Duodenum
16	chr6:37068800-37070000	Enhancers	Fetal Intestine Large	intestine
17	chr6:37068800-37070000	Enhancers	Fetal Intestine Small	intestine
18	chr6:37068800-37070000	Enhancers	K562	blood
19	chr6:37069000-37070000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr6:37069000-37070000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr6:37069000-37070000	Enhancers	A549	lung
22	chr6:37069000-37070200	Enhancers	Fetal Thymus	thymus
23	chr6:37069000-37072000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr6:37069200-37070000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr6:37069200-37070200	Enhancers	Placenta	Placenta
26	chr6:37069600-37070000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
27	chr6:37069600-37070000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr6:37069600-37070000	Enhancers	Cortex derived primary cultured neurospheres	brain
29	chr6:37069600-37070000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr6:37069600-37070000	Enhancers	Liver	Liver
31	chr6:37069600-37070000	Enhancers	Brain Hippocampus Middle	brain
32	chr6:37069600-37070000	Enhancers	Fetal Stomach	stomach
33	chr6:37069600-37070000	Enhancers	Rectal Mucosa Donor 31	rectum
34	chr6:37069600-37070200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
35	chr6:37069600-37070400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
36	chr6:37069600-37071400	Enhancers	Spleen	Spleen
37	chr6:37069600-37071400	Flanking Active TSS	Dnd41	blood
38	chr6:37069800-37070000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr6:37069800-37070000	Enhancers	Primary T cells from cord blood	blood
40	chr6:37069800-37070000	Enhancers	Primary T cells fromperipheralblood	blood
41	chr6:37069800-37070000	Enhancers	Primary hematopoietic stem cells	blood
42	chr6:37069800-37070000	Enhancers	Primary T helper naive cells from peripheral blood	blood
43	chr6:37069800-37070000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
44	chr6:37069800-37070000	Enhancers	Primary T helper cells PMA-I stimulated	--
45	chr6:37069800-37070000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
46	chr6:37069800-37070000	Enhancers	Primary T helper cells fromperipheralblood	blood
47	chr6:37069800-37070000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
48	chr6:37069800-37070000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr6:37069800-37070000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
50	chr6:37069800-37070000	Enhancers	Primary T killer memory cells from peripheral blood	blood

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