Variant report

Variant	rs11962008
Chromosome Location	chr6:37190588-37190589
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:190)
CpG islands
(count:61)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:190 , 50 per page) page: 1 2 3 4

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TAF1	chr6:37189663-37190701	HepG2	liver:	n/a	n/a
2	SMC3	chr6:37190278-37190753	Hela-S3	cervix:	n/a	n/a
3	CTCF	chr6:37190563-37190632	K562	blood:	n/a	n/a
4	NR2F2	chr6:37190220-37190772	K562	blood:	n/a	n/a
5	TAF1	chr6:37190215-37190646	PFSK-1	brain:	n/a	n/a
6	CEBPB	chr6:37190563-37190720	K562	blood:	n/a	n/a
7	TCF12	chr6:37190075-37190917	ECC-1	luminal epithelium:	n/a	n/a
8	SIN3AK20	chr6:37190263-37190768	PFSK-1	brain:	n/a	n/a
9	STAT3	chr6:37190380-37190743	MCF10A-Er-Src	breast:	n/a	n/a
10	POLR2A	chr6:37190203-37190700	GM12892	blood:	n/a	n/a
11	MXI1	chr6:37189772-37190759	HepG2	liver:	n/a	n/a
12	RCOR1	chr6:37190271-37190840	K562	blood:	n/a	n/a
13	ZNF143	chr6:37190275-37190768	K562	blood:	n/a	n/a
14	CTCF	chr6:37190560-37190710	HCPEpiC	choroid plexus:	n/a	n/a
15	STAT3	chr6:37190337-37190784	MCF10A-Er-Src	breast:	n/a	n/a
16	CREB1	chr6:37190273-37190700	A549	lung:	n/a	n/a
17	RAD21	chr6:37190109-37190724	SK-N-SH_RA	brain:	n/a	n/a
18	UBTF	chr6:37190239-37190731	K562	blood:	n/a	n/a
19	POLR2A	chr6:37189644-37190808	PFSK-1	brain:	n/a	n/a
20	TBP	chr6:37189665-37190707	H1-hESC	embryonic stem cell:	n/a	n/a
21	POLR2A	chr6:37189611-37190807	SK-N-MC	brain:	n/a	n/a
22	CTCF	chr6:37190540-37190690	AG04450	lung:	n/a	n/a
23	POLR2A	chr6:37189747-37190685	ECC-1	luminal epithelium:	n/a	n/a
24	MAX	chr6:37190144-37190769	ECC-1	luminal epithelium:	n/a	n/a
25	POLR2A	chr6:37190217-37190638	MCF-7	breast:	n/a	n/a
26	CREB1	chr6:37189577-37190869	HepG2	liver:	n/a	n/a
27	SIN3A	chr6:37189676-37190767	H1-hESC	embryonic stem cell:	n/a	n/a
28	ZNF143	chr6:37190247-37190613	GM12878	blood:	n/a	n/a
29	GABPA	chr6:37190034-37190665	K562	blood:	n/a	n/a
30	POLR2A	chr6:37190178-37190698	MCF-7	breast:	n/a	n/a
31	YY1	chr6:37190273-37190712	GM12891	blood:	n/a	n/a
32	POLR2A	chr6:37190572-37190661	A549	lung:	n/a	n/a
33	CEBPD	chr6:37189710-37190615	HepG2	liver:	n/a	n/a
34	HDAC2	chr6:37189871-37190655	HepG2	liver:	n/a	n/a
35	RAD21	chr6:37190338-37190658	H1-hESC	embryonic stem cell:	n/a	n/a
36	PBX3	chr6:37190338-37190976	SK-N-SH	brain:	n/a	n/a
37	MAX	chr6:37190270-37190707	K562	blood:	n/a	n/a
38	CTCF	chr6:37190500-37190650	WERI-Rb-1	eye:	n/a	n/a
39	CHD2	chr6:37189996-37190732	Hela-S3	cervix:	n/a	n/a
40	PAX5	chr6:37189972-37190632	GM12892	blood:	n/a	n/a
41	CTCF	chr6:37190356-37190753	K562	blood:	n/a	n/a
42	POLR2A	chr6:37190344-37190709	MCF10A-Er-Src	breast:	n/a	n/a
43	RCOR1	chr6:37190136-37190743	Hela-S3	cervix:	n/a	n/a
44	TCF12	chr6:37190280-37190695	GM12878	blood:	n/a	n/a
45	MXI1	chr6:37189190-37191099	SK-N-SH	brain:	n/a	n/a
46	FOS	chr6:37190460-37190656	MCF10A-Er-Src	breast:	n/a	n/a
47	SP1	chr6:37190101-37190619	A549	lung:	n/a	n/a
48	BHLHE40	chr6:37190463-37190654	GM12878	blood:	n/a	n/a
49	TAF1	chr6:37190383-37190711	Hela-S3	cervix:	n/a	n/a
50	CTCF	chr6:37190537-37190657	Spleen_OC	spleen:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:37190552-37190602	HMEC	breast:	n/a
2	chr6:37190552-37190602	NB4	blood:	n/a
3	chr6:37190552-37190602	BJ	skin:	n/a
4	chr6:37190552-37190602	HCT-116	colon:	n/a
5	chr6:37190552-37190602	GM12892	blood:	n/a
6	chr6:37190552-37190602	BE2_C	brain:	n/a
7	chr6:37190552-37190602	HCPEpiC	choroid plexus:	n/a
8	chr6:37190552-37190602	HRCEpiC	kidney:	n/a
9	chr6:37190552-37190602	A549	lung:	n/a
10	chr6:37190552-37190602	GM12891	blood:	n/a
11	chr6:37190552-37190602	Caco-2	colon:	n/a
12	chr6:37190552-37190602	HRPEpiC	eye:	n/a
13	chr6:37190552-37190602	MCF10A-Er-Src	breast:	n/a
14	chr6:37190552-37190602	HPAEpiC	pulmonary alveolar:	n/a
15	chr6:37190552-37190602	ECC-1	luminal epithelium:	n/a
16	chr6:37190552-37190602	NHBE	bronchial:	n/a
17	chr6:37190552-37190602	AG04449	skin:	fetal
18	chr6:37190552-37190602	PrEC	prostate:	n/a
19	chr6:37190552-37190602	HAEpiC	amniotic membrane:	n/a
20	chr6:37190552-37190602	HepG2	liver:	n/a
21	chr6:37190552-37190602	SK-N-MC	brain:	n/a
22	chr6:37190552-37190602	PFSK-1	brain:	n/a
23	chr6:37190552-37190602	NH-A	brain:	n/a
24	chr6:37190552-37190602	HRE	kidney:	n/a
25	chr6:37190552-37190602	HUVEC	blood vessel:	n/a
26	chr6:37190552-37190602	MCF-7	breast:	n/a
27	chr6:37190552-37190602	GM06990	blood:	n/a
28	chr6:37190552-37190602	RPTEC	kidney:	n/a
29	chr6:37190552-37190602	SK-N-SH_RA	brain:	n/a
30	chr6:37190552-37190602	HNPCEpiC	eye:	n/a
31	chr6:37190552-37190602	T-47D	breast:	n/a
32	chr6:37190552-37190602	HCF	heart:	n/a
33	chr6:37190552-37190602	CMK	blood:	n/a
34	chr6:37190552-37190602	LNCaP	prostate:	n/a
35	chr6:37190552-37190602	NHDF-neo	bronchial:	n/a
36	chr6:37190552-37190602	Hepatocyte	liver:	n/a
37	chr6:37190552-37190602	AG10803	skin:	n/a
38	chr6:37190552-37190602	PANC-1	pancreas:	n/a
39	chr6:37190552-37190602	ProgFib	skin:	n/a
40	chr6:37190552-37190602	GM19239	blood:	n/a
41	chr6:37190552-37190602	IMR90	lung:	fetal
42	chr6:37190552-37190602	AG09319	gingival:	n/a
43	chr6:37190552-37190602	Hela-S3	cervix:	n/a
44	chr6:37190552-37190602	Jurkat	blood:	n/a
45	chr6:37190552-37190602	HL-60	blood:	n/a
46	chr6:37190552-37190602	ovcar-3	ovarian:	n/a
47	chr6:37190552-37190602	U87	brain:	n/a
48	chr6:37190552-37190602	HCM	heart:	n/a
49	chr6:37190552-37190602	K562	blood:	n/a
50	chr6:37190552-37190602	SAEC	small airway:	n/a

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:36985158..36987310-chr6:37189028..37190861,2	K562	blood:
2	chr6:37189826..37192743-chr6:37195283..37198466,4	K562	blood:
3	chr6:37188645..37192022-chr6:37224032..37228554,5	K562	blood:
4	chr6:37189035..37191912-chr6:37193336..37196245,2	MCF-7	breast:
5	chr6:37190337..37192037-chr6:37231532..37234101,2	K562	blood:
6	chr6:37189710..37190664-chr6:37282782..37283304,2	K562	blood:
7	chr6:37188645..37195045-chr6:37223083..37227292,6	K562	blood:

No data

Variant related genes	Relation type
TMEM217	TF binding region
TMEM217	CpG island
ENSG00000065491	Chromatin interaction
ENSG00000172738	Chromatin interaction

rs_ID	r²[population]
rs73730532	1.00[EUR][1000 genomes]
rs9470473	1.00[EUR][1000 genomes]

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37189400-37190600	Active TSS	HUES48 Cell Line	embryonic stem cell
2	chr6:37189400-37190600	Active TSS	iPS-18 Cell Line	embryonic stem cell
3	chr6:37189400-37190600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:37189400-37190800	Active TSS	H9 Cell Line	embryonic stem cell
5	chr6:37189400-37190800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr6:37189400-37191000	Active TSS	ES-I3 Cell Line	embryonic stem cell
7	chr6:37189400-37191000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
8	chr6:37189600-37190600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr6:37189600-37190600	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr6:37189600-37190600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr6:37189600-37190600	Active TSS	Rectal Smooth Muscle	rectum
12	chr6:37189600-37190800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
13	chr6:37189600-37190800	Active TSS	Primary T cells from cord blood	blood
14	chr6:37189600-37190800	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
15	chr6:37189600-37190800	Flanking Active TSS	Adipose Nuclei	Adipose
16	chr6:37189600-37190800	Flanking Active TSS	Liver	Liver
17	chr6:37189600-37190800	Active TSS	Brain Angular Gyrus	brain
18	chr6:37189600-37190800	Active TSS	Brain Cingulate Gyrus	brain
19	chr6:37189600-37190800	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
20	chr6:37189600-37190800	Active TSS	Fetal Kidney	kidney
21	chr6:37189600-37190800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
22	chr6:37189600-37191000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
23	chr6:37189600-37191000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr6:37189600-37191000	Active TSS	Pancreatic Islets	Pancreatic Islet
25	chr6:37189600-37191000	Flanking Active TSS	HUVEC	blood vessel
26	chr6:37189600-37191200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr6:37189600-37191200	Active TSS	Duodenum Smooth Muscle	Duodenum
28	chr6:37189800-37190600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
29	chr6:37189800-37190600	Active TSS	HUES64 Cell Line	embryonic stem cell
30	chr6:37189800-37190600	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr6:37189800-37190600	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
32	chr6:37189800-37190600	Active TSS	Muscle Satellite Cultured Cells	--
33	chr6:37189800-37190600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr6:37189800-37190600	Transcr. at gene 5' and 3'	Right Atrium	heart
35	chr6:37189800-37190600	Flanking Active TSS	Stomach Smooth Muscle	stomach
36	chr6:37189800-37190600	Active TSS	NH-A	brain
37	chr6:37189800-37190600	Active TSS	NHEK	skin
38	chr6:37189800-37190800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr6:37189800-37190800	Active TSS	HUES6 Cell Line	embryonic stem cell
40	chr6:37189800-37190800	Active TSS	iPS-20b Cell Line	embryonic stem cell
41	chr6:37189800-37190800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr6:37189800-37190800	Flanking Active TSS	Primary B cells from cord blood	blood
43	chr6:37189800-37190800	Flanking Active TSS	Primary B cells from peripheral blood	blood
44	chr6:37189800-37190800	Flanking Active TSS	Primary T cells fromperipheralblood	blood
45	chr6:37189800-37190800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
46	chr6:37189800-37190800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
47	chr6:37189800-37190800	Active TSS	Aorta	Aorta
48	chr6:37189800-37190800	Active TSS	Brain Inferior Temporal Lobe	brain
49	chr6:37189800-37190800	Flanking Active TSS	Fetal Muscle Trunk	muscle
50	chr6:37189800-37190800	Flanking Active TSS	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links