Variant report

Variant	rs73417868
Chromosome Location	chr6:37208021-37208022
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:37204122..37207568-chr6:37207883..37210743,4	K562	blood:
2	chr6:37191264..37193450-chr6:37206499..37209407,3	K562	blood:
3	chr6:37207006..37209300-chr6:37217773..37220326,2	MCF-7	breast:
4	chr6:37207667..37210098-chr6:37279823..37281757,2	K562	blood:
5	chr6:37207776..37210309-chr6:37211677..37216303,5	K562	blood:
6	chr6:37207707..37209642-chr6:37210395..37212218,2	K562	blood:

Variant related genes	Relation type
ENSG00000238375	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs55740797	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56222403	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60947036	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6917628	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73417837	1.00[AMR][1000 genomes]
rs73417847	1.00[AMR][1000 genomes]
rs73417851	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73417853	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7753853	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9918398	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9918399	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9918429	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9918482	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37204400-37210000	Enhancers	NH-A	brain
2	chr6:37204600-37212600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr6:37205400-37209800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr6:37205600-37208800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:37205800-37210000	Enhancers	Osteobl	bone
6	chr6:37205800-37213000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr6:37206000-37208200	Enhancers	Adipose Nuclei	Adipose
8	chr6:37206000-37213400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr6:37206200-37208600	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr6:37206200-37208600	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr6:37206200-37209800	Enhancers	Muscle Satellite Cultured Cells	--
12	chr6:37206200-37210800	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr6:37206200-37214800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr6:37206400-37209800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr6:37206400-37210000	Enhancers	NHEK	skin
16	chr6:37206400-37213000	Weak transcription	Aorta	Aorta
17	chr6:37206600-37208600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr6:37206800-37213400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr6:37207000-37209200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr6:37207000-37209800	Enhancers	NHLF	lung
21	chr6:37207000-37210000	Enhancers	Small Intestine	intestine
22	chr6:37207000-37213600	Enhancers	Fetal Stomach	stomach
23	chr6:37207200-37208400	Enhancers	Fetal Lung	lung
24	chr6:37207200-37208600	Enhancers	GM12878-XiMat	blood
25	chr6:37207200-37213600	Enhancers	HUVEC	blood vessel
26	chr6:37207400-37208400	Enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr6:37207400-37208400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr6:37207400-37208400	Enhancers	Colon Smooth Muscle	Colon
29	chr6:37207400-37208400	Enhancers	Duodenum Mucosa	Duodenum
30	chr6:37207400-37208400	Genic enhancers	Duodenum Smooth Muscle	Duodenum
31	chr6:37207400-37208400	Enhancers	Fetal Intestine Small	intestine
32	chr6:37207400-37208400	Enhancers	Fetal Thymus	thymus
33	chr6:37207400-37208400	Enhancers	Rectal Mucosa Donor 31	rectum
34	chr6:37207400-37208400	Enhancers	Sigmoid Colon	Sigmoid Colon
35	chr6:37207400-37208600	Enhancers	Primary T helper cells PMA-I stimulated	--
36	chr6:37207400-37208600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
37	chr6:37207400-37208600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
38	chr6:37207400-37208600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
39	chr6:37207400-37208600	Enhancers	Primary T killer memory cells from peripheral blood	blood
40	chr6:37207400-37208600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr6:37207400-37208600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr6:37207400-37208600	Enhancers	Cortex derived primary cultured neurospheres	brain
43	chr6:37207400-37208600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr6:37207400-37208600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
45	chr6:37207400-37208600	Flanking Active TSS	A549	lung
46	chr6:37207400-37208600	Enhancers	Hela-S3	cervix
47	chr6:37207400-37208800	Enhancers	Primary neutrophils fromperipheralblood	blood
48	chr6:37207400-37209200	Enhancers	Stomach Smooth Muscle	stomach
49	chr6:37207400-37209400	Enhancers	Dnd41	blood
50	chr6:37207400-37210000	Enhancers	HSMMtube	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links