Variant report

Variant	rs56222403
Chromosome Location	chr6:37205627-37205628
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:37204495..37206124-chr6:37209965..37212301,2	MCF-7	breast:
2	chr11:97789010..97791990-chr6:37205022..37206705,2	MCF-7	breast:
3	chr6:37204122..37207568-chr6:37207883..37210743,4	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs55740797	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60947036	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6917628	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73417837	1.00[AMR][1000 genomes]
rs73417847	1.00[AMR][1000 genomes]
rs73417851	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73417853	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73417868	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7753853	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9918398	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9918399	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9918429	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9918482	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37191400-37207400	Weak transcription	Dnd41	blood
2	chr6:37191400-37207600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr6:37200400-37206200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr6:37203200-37206400	Enhancers	K562	blood
5	chr6:37204000-37206400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr6:37204200-37206400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:37204200-37206400	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr6:37204200-37206400	Enhancers	HUVEC	blood vessel
9	chr6:37204400-37210000	Enhancers	NH-A	brain
10	chr6:37204600-37212600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr6:37204800-37206200	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr6:37204800-37207000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr6:37204800-37207400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr6:37205000-37207400	Weak transcription	HepG2	liver
15	chr6:37205000-37207600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr6:37205000-37207600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr6:37205200-37206000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr6:37205200-37206200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr6:37205200-37206200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr6:37205200-37206200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr6:37205200-37206200	Weak transcription	GM12878-XiMat	blood
22	chr6:37205200-37206600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr6:37205200-37207000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr6:37205400-37205800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr6:37205400-37205800	Weak transcription	Osteobl	bone
26	chr6:37205400-37206400	Weak transcription	NHEK	skin
27	chr6:37205400-37207400	Weak transcription	A549	lung
28	chr6:37205400-37209800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr6:37205600-37208800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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