Variant report

Variant	rs9918398
Chromosome Location	chr6:37209256-37209257
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:37140209..37142821-chr6:37208143..37209715,2	K562	blood:
2	chr6:37204122..37207568-chr6:37207883..37210743,4	K562	blood:
3	chr6:37191264..37193450-chr6:37206499..37209407,3	K562	blood:
4	chr6:37207006..37209300-chr6:37217773..37220326,2	MCF-7	breast:
5	chr6:37207667..37210098-chr6:37279823..37281757,2	K562	blood:
6	chr6:37208961..37211353-chr6:37230274..37233612,3	K562	blood:
7	chr6:37208175..37211022-chr6:37248021..37250204,2	K562	blood:
8	chr6:37029733..37032417-chr6:37208544..37210313,2	K562	blood:
9	chr6:37207776..37210309-chr6:37211677..37216303,5	K562	blood:
10	chr6:37207707..37209642-chr6:37210395..37212218,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000238375	Chromatin interaction
ENSG00000137193	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs262923	0.83[YRI][hapmap]
rs2842618	0.83[YRI][hapmap]
rs55740797	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56222403	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60947036	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6917628	0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73417851	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73417853	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73417868	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7753853	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9918399	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9918429	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9918482	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37204400-37210000	Enhancers	NH-A	brain
2	chr6:37204600-37212600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr6:37205400-37209800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr6:37205800-37210000	Enhancers	Osteobl	bone
5	chr6:37205800-37213000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr6:37206000-37213400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr6:37206200-37209800	Enhancers	Muscle Satellite Cultured Cells	--
8	chr6:37206200-37210800	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr6:37206200-37214800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr6:37206400-37209800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr6:37206400-37210000	Enhancers	NHEK	skin
12	chr6:37206400-37213000	Weak transcription	Aorta	Aorta
13	chr6:37206800-37213400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr6:37207000-37209800	Enhancers	NHLF	lung
15	chr6:37207000-37210000	Enhancers	Small Intestine	intestine
16	chr6:37207000-37213600	Enhancers	Fetal Stomach	stomach
17	chr6:37207200-37213600	Enhancers	HUVEC	blood vessel
18	chr6:37207400-37209400	Enhancers	Dnd41	blood
19	chr6:37207400-37210000	Enhancers	HSMMtube	muscle
20	chr6:37207400-37212200	Enhancers	NHDF-Ad	bronchial
21	chr6:37207400-37212400	Enhancers	Fetal Intestine Large	intestine
22	chr6:37207400-37213400	Enhancers	Fetal Heart	heart
23	chr6:37207400-37213400	Enhancers	HMEC	breast
24	chr6:37207600-37210000	Enhancers	HSMM	muscle
25	chr6:37207600-37214800	Enhancers	Fetal Muscle Leg	muscle
26	chr6:37207800-37210800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr6:37208000-37210200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr6:37208000-37212200	Weak transcription	Brain Hippocampus Middle	brain
29	chr6:37208000-37212800	Enhancers	Skeletal Muscle Male	skeletal muscle
30	chr6:37208000-37214600	Enhancers	Skeletal Muscle Female	skeletal muscle
31	chr6:37208200-37209800	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr6:37208200-37211000	Weak transcription	Adipose Nuclei	Adipose
33	chr6:37208400-37209600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr6:37208400-37209800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr6:37208400-37209800	Weak transcription	Fetal Intestine Small	intestine
36	chr6:37208400-37209800	Weak transcription	Placenta	Placenta
37	chr6:37208400-37209800	Weak transcription	Rectal Smooth Muscle	rectum
38	chr6:37208400-37209800	Weak transcription	Right Ventricle	heart
39	chr6:37208400-37209800	Weak transcription	Stomach Mucosa	stomach
40	chr6:37208400-37210000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr6:37208400-37210000	Weak transcription	Colon Smooth Muscle	Colon
42	chr6:37208400-37210000	Weak transcription	Fetal Lung	lung
43	chr6:37208400-37210000	Weak transcription	Pancreas	Pancrea
44	chr6:37208400-37210000	Enhancers	K562	blood
45	chr6:37208400-37211000	Weak transcription	Fetal Kidney	kidney
46	chr6:37208400-37211000	Weak transcription	Psoas Muscle	Psoas
47	chr6:37208400-37211400	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr6:37208400-37211400	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr6:37208400-37211600	Weak transcription	Colonic Mucosa	Colon
50	chr6:37208400-37211600	Weak transcription	Duodenum Mucosa	Duodenum

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