Variant report

Variant	rs3778014
Chromosome Location	chr6:37323039-37323040
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:37321870..37324208-chr6:37454012..37456145,2	K562	blood:
2	chr6:37321142..37324729-chr6:37426425..37428808,3	K562	blood:
3	chr6:37321701..37323718-chr6:37336446..37338578,2	MCF-7	breast:
4	chr6:37320614..37323224-chr6:37327841..37329776,2	MCF-7	breast:
5	chr6:37322263..37324339-chr6:37389226..37391465,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000239953	Chromatin interaction
ENSG00000137200	Chromatin interaction
ENSG00000112130	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs16889749	0.84[JPT][hapmap];1.00[EUR][1000 genomes]
rs195379	0.84[JPT][hapmap]
rs195383	0.85[JPT][hapmap]
rs195384	0.84[JPT][hapmap]
rs195386	0.84[JPT][hapmap]
rs195417	0.98[ASN][1000 genomes]
rs2269055	0.86[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2284924	1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56203665	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56947102	1.00[EUR][1000 genomes]
rs57118340	1.00[EUR][1000 genomes]
rs57216495	1.00[EUR][1000 genomes]
rs59352424	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73423680	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73423695	1.00[EUR][1000 genomes]
rs7747175	1.00[EUR][1000 genomes]
rs989603	1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37321200-37323200	Active TSS	HUES6 Cell Line	embryonic stem cell
2	chr6:37321200-37323200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr6:37321200-37323200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:37321200-37323200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
5	chr6:37321200-37323200	Active TSS	NHLF	lung
6	chr6:37321200-37323400	Active TSS	H9 Cell Line	embryonic stem cell
7	chr6:37321200-37323400	Active TSS	Brain Hippocampus Middle	brain
8	chr6:37321200-37323600	Active TSS	H1 Cell Line	embryonic stem cell
9	chr6:37321200-37323800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr6:37321400-37323200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
11	chr6:37321400-37323200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
12	chr6:37321400-37323200	Active TSS	Ovary	ovary
13	chr6:37321400-37323400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr6:37321600-37323200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr6:37321600-37323200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr6:37321600-37323200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr6:37321600-37323200	Active TSS	A549	lung
18	chr6:37321600-37323200	Active TSS	Hela-S3	cervix
19	chr6:37321600-37323200	Active TSS	HSMMtube	muscle
20	chr6:37321600-37323400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr6:37321600-37323400	Active TSS	iPS-15b Cell Line	embryonic stem cell
22	chr6:37321600-37323400	Active TSS	iPS-20b Cell Line	embryonic stem cell
23	chr6:37321800-37323200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr6:37322000-37323200	Flanking Active TSS	Primary B cells from cord blood	blood
25	chr6:37322000-37323200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr6:37322200-37323200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr6:37322400-37323200	Active TSS	Fetal Stomach	stomach
28	chr6:37322400-37323400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr6:37322600-37323200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
30	chr6:37322600-37323200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
31	chr6:37322600-37323200	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
32	chr6:37322600-37323200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
33	chr6:37322600-37323200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr6:37322600-37323200	Flanking Active TSS	Brain Angular Gyrus	brain
35	chr6:37322600-37323200	Flanking Active TSS	Fetal Brain Male	brain
36	chr6:37322600-37323200	Flanking Active TSS	Fetal Muscle Leg	muscle
37	chr6:37322600-37323200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
38	chr6:37322600-37323200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
39	chr6:37322600-37323200	Enhancers	Spleen	Spleen
40	chr6:37322600-37323200	Flanking Active TSS	Osteobl	bone
41	chr6:37322600-37323400	Flanking Active TSS	Primary hematopoietic stem cells	blood
42	chr6:37322600-37323400	Flanking Active TSS	Adipose Nuclei	Adipose
43	chr6:37322600-37323400	Flanking Active TSS	Fetal Heart	heart
44	chr6:37322600-37323400	Flanking Active TSS	K562	blood
45	chr6:37322600-37323600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr6:37322600-37323600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr6:37322600-37323600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr6:37322600-37323600	Flanking Active TSS	Dnd41	blood
49	chr6:37322800-37323200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
50	chr6:37322800-37323200	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast

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