Variant report

Variant	rs16900702
Chromosome Location	chr8:90808845-90808846
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:90774651..90777545-chr8:90807253..90809374,2	MCF-7	breast:
2	chr8:90801418..90803391-chr8:90808526..90811319,2	MCF-7	breast:
3	chr8:90802147..90804411-chr8:90807957..90809553,2	MCF-7	breast:
4	chr8:90806351..90809015-chr8:90995258..90997957,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000104320	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs16900442	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73694489	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73694495	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73694500	0.83[AMR][1000 genomes]
rs7835597	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933502	chr8:90702392-91049100	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	62 gene(s)	inside rSNPs	diseases
2	nsv934114	chr8:90720182-90999106	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
3	nsv891181	chr8:90737258-90819998	Strong transcription Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
4	nsv891182	chr8:90785685-90888786	Flanking Active TSS Genic enhancers Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:90772200-90809400	Weak transcription	Small Intestine	intestine
2	chr8:90773000-90812400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr8:90783800-90829000	Weak transcription	Aorta	Aorta
4	chr8:90785600-90813800	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr8:90785800-90810800	Weak transcription	Fetal Brain Female	brain
6	chr8:90786000-90813000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr8:90786400-90809800	Weak transcription	HepG2	liver
8	chr8:90799400-90810200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr8:90799400-90814000	Weak transcription	Gastric	stomach
10	chr8:90799800-90811800	Weak transcription	Fetal Kidney	kidney
11	chr8:90801000-90809600	Weak transcription	Fetal Intestine Small	intestine
12	chr8:90801200-90809800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr8:90802600-90809200	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr8:90802600-90809600	Weak transcription	Brain Substantia Nigra	brain
15	chr8:90802600-90810200	Weak transcription	Fetal Intestine Large	intestine
16	chr8:90802600-90814200	Weak transcription	K562	blood
17	chr8:90803000-90811000	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr8:90803000-90813400	Weak transcription	Hela-S3	cervix
19	chr8:90803200-90810400	Weak transcription	Colonic Mucosa	Colon
20	chr8:90803600-90810400	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr8:90803600-90811200	Weak transcription	Primary T cells from cord blood	blood
22	chr8:90803600-90813800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr8:90804400-90809200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr8:90804400-90809600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr8:90805400-90817000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr8:90805600-90809200	Weak transcription	Primary B cells from peripheral blood	blood
27	chr8:90805800-90809600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr8:90806200-90809200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr8:90806200-90814000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr8:90806400-90809600	Weak transcription	Primary B cells from cord blood	blood
31	chr8:90806400-90810200	Weak transcription	Placenta	Placenta
32	chr8:90806400-90811600	Weak transcription	Liver	Liver
33	chr8:90806400-90814000	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr8:90806600-90811200	Weak transcription	Monocytes-CD14+_RO01746	blood
35	chr8:90807000-90812600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr8:90807200-90811200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr8:90808000-90810600	Enhancers	Muscle Satellite Cultured Cells	--
38	chr8:90808000-90814000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr8:90808200-90812000	Enhancers	Osteobl	bone
40	chr8:90808400-90809000	Enhancers	HUVEC	blood vessel
41	chr8:90808400-90810000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr8:90808400-90810000	Enhancers	NH-A	brain
43	chr8:90808400-90810000	Enhancers	NHEK	skin
44	chr8:90808400-90810200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr8:90808400-90810400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr8:90808400-90810400	Enhancers	NHLF	lung
47	chr8:90808400-90810600	Enhancers	HMEC	breast
48	chr8:90808400-90810800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr8:90808400-90812000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr8:90808400-90812000	Enhancers	NHDF-Ad	bronchial

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