Variant report

Variant	rs16900442
Chromosome Location	chr8:90776773-90776774
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:90774651..90777545-chr8:90807253..90809374,2	MCF-7	breast:
2	chr8:90775245..90777466-chr8:90780625..90782442,2	K562	blood:
3	chr8:90775597..90777487-chr8:90778142..90780568,2	K562	blood:
4	chr8:90776459..90778873-chr8:90786925..90789865,2	K562	blood:
5	chr8:90774118..90777411-chr8:90913721..90915849,3	MCF-7	breast:
6	chr8:90775966..90778463-chr8:90780267..90782442,2	K562	blood:

Variant related genes	Relation type
ENSG00000164823	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs16900702	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs16900823	0.83[AMR][1000 genomes]
rs16900885	0.83[AMR][1000 genomes]
rs16900910	0.83[AMR][1000 genomes]
rs16900915	0.83[AMR][1000 genomes]
rs16900927	0.83[AMR][1000 genomes]
rs16900928	0.83[AMR][1000 genomes]
rs16900996	0.83[AMR][1000 genomes]
rs56180983	0.83[AMR][1000 genomes]
rs56729468	0.83[AMR][1000 genomes]
rs59398315	0.83[AMR][1000 genomes]
rs59483185	0.83[AMR][1000 genomes]
rs61138709	0.83[AMR][1000 genomes]
rs61327386	0.83[AMR][1000 genomes]
rs73694489	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73694495	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73694500	1.00[AMR][1000 genomes]
rs73696804	0.83[AMR][1000 genomes]
rs73696806	0.83[AMR][1000 genomes]
rs73696812	0.83[AMR][1000 genomes]
rs73696816	0.83[AMR][1000 genomes]
rs73696819	0.83[AMR][1000 genomes]
rs73696820	0.83[AMR][1000 genomes]
rs73696821	0.83[AMR][1000 genomes]
rs7819919	0.83[AMR][1000 genomes]
rs7822697	0.83[AMR][1000 genomes]
rs7835597	1.00[AMR][1000 genomes]
rs966597	0.83[AMR][1000 genomes]
rs9785090	0.83[AMR][1000 genomes]
rs9969533	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891180	chr8:90697810-90802491	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
2	nsv933502	chr8:90702392-91049100	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	62 gene(s)	inside rSNPs	diseases
3	nsv934114	chr8:90720182-90999106	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
4	nsv891181	chr8:90737258-90819998	Strong transcription Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:90771000-90797000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:90771600-90803800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr8:90771800-90777400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr8:90771800-90784400	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr8:90771800-90805000	Weak transcription	Esophagus	oesophagus
6	chr8:90772000-90777400	Weak transcription	Primary T cells from cord blood	blood
7	chr8:90772000-90778000	Weak transcription	Duodenum Mucosa	Duodenum
8	chr8:90772000-90778400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr8:90772000-90784600	Weak transcription	Fetal Muscle Trunk	muscle
10	chr8:90772000-90785000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr8:90772000-90785400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr8:90772000-90796800	Weak transcription	Lung	lung
13	chr8:90772000-90797000	Weak transcription	Ovary	ovary
14	chr8:90772200-90777600	Weak transcription	Placenta	Placenta
15	chr8:90772200-90778000	Weak transcription	Fetal Kidney	kidney
16	chr8:90772200-90778200	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr8:90772200-90778200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr8:90772200-90778200	Weak transcription	Rectal Smooth Muscle	rectum
19	chr8:90772200-90783600	Weak transcription	Primary neutrophils fromperipheralblood	blood
20	chr8:90772200-90783800	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr8:90772200-90784600	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr8:90772200-90785200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr8:90772200-90785600	Weak transcription	Fetal Muscle Leg	muscle
24	chr8:90772200-90802000	Weak transcription	Colonic Mucosa	Colon
25	chr8:90772200-90802400	Weak transcription	Spleen	Spleen
26	chr8:90772200-90805200	Weak transcription	Fetal Brain Male	brain
27	chr8:90772200-90807200	Weak transcription	Pancreas	Pancrea
28	chr8:90772200-90809400	Weak transcription	Small Intestine	intestine
29	chr8:90772400-90777600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr8:90772400-90777600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr8:90772400-90778200	Weak transcription	Fetal Intestine Large	intestine
32	chr8:90772400-90778200	Weak transcription	Fetal Lung	lung
33	chr8:90772400-90784000	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr8:90772400-90784600	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr8:90772400-90784800	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr8:90772400-90784800	Weak transcription	Stomach Smooth Muscle	stomach
37	chr8:90772400-90785200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr8:90772400-90787200	Weak transcription	Fetal Stomach	stomach
39	chr8:90772400-90790600	Weak transcription	NHEK	skin
40	chr8:90772400-90802200	Weak transcription	Colon Smooth Muscle	Colon
41	chr8:90772600-90777800	Weak transcription	Liver	Liver
42	chr8:90772600-90784400	Weak transcription	Left Ventricle	heart
43	chr8:90773000-90783400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr8:90773000-90784400	Weak transcription	HSMMtube	muscle
45	chr8:90773000-90785200	Weak transcription	Brain Cingulate Gyrus	brain
46	chr8:90773000-90785200	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr8:90773000-90806800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr8:90773000-90812400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
49	chr8:90773200-90777400	Weak transcription	HUVEC	blood vessel
50	chr8:90773200-90777800	Weak transcription	Primary B cells from peripheral blood	blood

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