Variant report

Variant	rs16900996
Chromosome Location	chr8:90850584-90850585
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:90848881..90850770-chr8:90855549..90858442,2	MCF-7	breast:
2	chr8:90835990..90838723-chr8:90850259..90852353,2	K562	blood:
3	chr8:90845301..90847765-chr8:90850348..90853325,2	MCF-7	breast:
4	chr8:90768306..90772219-chr8:90848541..90851274,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000104312	Chromatin interaction
ENSG00000253349	Chromatin interaction
ENSG00000251136	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs16900442	0.83[AMR][1000 genomes]
rs16900823	1.00[AMR][1000 genomes]
rs16900885	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16900910	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16900915	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16900927	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16900928	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56180983	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56729468	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59398315	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59483185	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61138709	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61327386	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73694500	0.83[AMR][1000 genomes]
rs73696804	1.00[AMR][1000 genomes]
rs73696806	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73696812	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73696816	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73696819	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73696820	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73696821	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7819919	0.93[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7822697	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7835597	0.83[AMR][1000 genomes]
rs966597	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9785090	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9969533	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933502	chr8:90702392-91049100	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	62 gene(s)	inside rSNPs	diseases
2	nsv934114	chr8:90720182-90999106	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
3	nsv891182	chr8:90785685-90888786	Flanking Active TSS Genic enhancers Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv520356	chr8:90823687-90857989	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv2761448	chr8:90837630-90853986	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:90846000-90850600	Enhancers	Primary T helper cells PMA-I stimulated	--
2	chr8:90847600-90860600	Weak transcription	Aorta	Aorta
3	chr8:90848600-90851600	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr8:90849000-90851800	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr8:90850000-90853000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr8:90850200-90850800	Enhancers	A549	lung
7	chr8:90850200-90852200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr8:90850200-90852800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr8:90850200-90853200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr8:90850200-90853200	Weak transcription	NHLF	lung
11	chr8:90850200-90853800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr8:90850200-90853800	Weak transcription	Primary hematopoietic stem cells	blood
13	chr8:90850200-90853800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr8:90850200-90853800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr8:90850200-90853800	Weak transcription	Osteobl	bone
16	chr8:90850200-90860600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr8:90850400-90850800	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr8:90850400-90852200	Weak transcription	HUVEC	blood vessel
19	chr8:90850400-90852400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr8:90850400-90852600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr8:90850400-90853200	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr8:90850400-90853200	Weak transcription	NHDF-Ad	bronchial
23	chr8:90850400-90854400	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr8:90850400-90860200	Weak transcription	GM12878-XiMat	blood

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