Variant report

Variant	rs7822697
Chromosome Location	chr8:90876602-90876603
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:90874955..90877119-chr8:90913162..90914813,2	MCF-7	breast:
2	chr8:90867270..90880457-chr8:90913050..90918593,18	MCF-7	breast:
3	chr8:90876426..90880425-chr8:90881590..90883827,5	MCF-7	breast:
4	chr8:90875884..90877610-chr8:90879120..90881443,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000207359	Chromatin interaction
ENSG00000164823	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs16900442	0.83[AMR][1000 genomes]
rs16900823	1.00[AMR][1000 genomes]
rs16900885	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16900910	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16900915	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16900927	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16900928	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16900996	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56180983	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56729468	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59398315	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59483185	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61138709	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61327386	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73694500	0.83[AMR][1000 genomes]
rs73696804	1.00[AMR][1000 genomes]
rs73696806	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73696812	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73696816	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73696819	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73696820	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73696821	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7819919	0.93[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7835597	0.83[AMR][1000 genomes]
rs966597	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9785090	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9969533	0.81[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933502	chr8:90702392-91049100	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	62 gene(s)	inside rSNPs	diseases
2	nsv934114	chr8:90720182-90999106	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
3	nsv891182	chr8:90785685-90888786	Flanking Active TSS Genic enhancers Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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