Variant report

Variant	rs16901753
Chromosome Location	chr8:127846275-127846276
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:127844604..127847451-chr8:127850237..127852011,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10505491	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16901755	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16901775	0.80[LWK][hapmap]
rs1826083	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62529847	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62529848	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62529850	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73330306	1.00[ASN][1000 genomes]
rs7827311	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1819408	chr8:127835876-127898165	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv6382	chr8:127845446-127890549	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:127842400-127847000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr8:127844400-127847800	Enhancers	Fetal Muscle Leg	muscle
3	chr8:127844400-127848000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr8:127844800-127847200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr8:127845000-127846600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr8:127845000-127846800	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr8:127845000-127846800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr8:127845000-127846800	Enhancers	Psoas Muscle	Psoas
9	chr8:127845000-127847000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr8:127845000-127847200	Enhancers	Fetal Muscle Trunk	muscle
11	chr8:127845200-127846800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr8:127845200-127846800	Enhancers	Fetal Heart	heart
13	chr8:127845400-127846600	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr8:127845400-127846600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr8:127845400-127846800	Enhancers	Colon Smooth Muscle	Colon
16	chr8:127845400-127846800	Enhancers	Fetal Lung	lung
17	chr8:127845400-127846800	Enhancers	Fetal Stomach	stomach
18	chr8:127845400-127847000	Enhancers	Placenta	Placenta
19	chr8:127845600-127846400	Enhancers	H1 Cell Line	embryonic stem cell
20	chr8:127845600-127846400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr8:127845600-127846400	Enhancers	Ovary	ovary
22	chr8:127845600-127846600	Enhancers	Right Atrium	heart
23	chr8:127845600-127846600	Enhancers	Right Ventricle	heart
24	chr8:127845600-127846600	Enhancers	Stomach Smooth Muscle	stomach
25	chr8:127845600-127846800	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr8:127845600-127846800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr8:127845600-127846800	Enhancers	Adipose Nuclei	Adipose
28	chr8:127845600-127846800	Enhancers	Fetal Thymus	thymus
29	chr8:127845600-127846800	Enhancers	Gastric	stomach
30	chr8:127845600-127846800	Enhancers	Left Ventricle	heart
31	chr8:127845600-127846800	Enhancers	HMEC	breast
32	chr8:127845600-127846800	Flanking Active TSS	Osteobl	bone
33	chr8:127845600-127847000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr8:127845800-127846400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr8:127845800-127846400	Enhancers	HUES48 Cell Line	embryonic stem cell
36	chr8:127845800-127846400	Enhancers	Primary T cells from cord blood	blood
37	chr8:127845800-127846400	Flanking Active TSS	HUVEC	blood vessel
38	chr8:127845800-127846600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
39	chr8:127845800-127846600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
40	chr8:127845800-127846600	Enhancers	iPS-20b Cell Line	embryonic stem cell
41	chr8:127845800-127846600	Enhancers	Fetal Brain Female	brain
42	chr8:127845800-127846600	Enhancers	Rectal Smooth Muscle	rectum
43	chr8:127845800-127846800	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr8:127845800-127846800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr8:127845800-127846800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr8:127845800-127846800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr8:127845800-127846800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr8:127845800-127846800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
49	chr8:127845800-127846800	Enhancers	Fetal Kidney	kidney
50	chr8:127845800-127846800	Enhancers	Placenta Amnion	Placenta Amnion

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