Variant report

Variant	rs7827311
Chromosome Location	chr8:127856329-127856330
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10106550	0.93[ASN][1000 genomes]
rs10156279	0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10505487	0.91[ASN][1000 genomes]
rs10505488	0.82[ASN][1000 genomes]
rs10505489	0.90[ASN][1000 genomes]
rs10505490	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10956330	1.00[ASN][1000 genomes]
rs10956331	0.91[ASN][1000 genomes]
rs10956332	0.87[ASN][1000 genomes]
rs11779539	0.89[ASN][1000 genomes]
rs11986860	0.92[ASN][1000 genomes]
rs11987858	0.85[ASN][1000 genomes]
rs11989801	0.92[ASN][1000 genomes]
rs11992578	0.94[ASN][1000 genomes]
rs12545906	0.87[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs13248340	0.96[ASN][1000 genomes]
rs1400462	0.91[ASN][1000 genomes]
rs16901776	0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs16901778	0.92[ASN][1000 genomes]
rs16901783	0.93[ASN][1000 genomes]
rs16901785	0.87[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs16901792	0.91[ASN][1000 genomes]
rs1826083	1.00[CEU][hapmap]
rs1972123	0.91[ASN][1000 genomes]
rs1973699	0.89[ASN][1000 genomes]
rs28409662	0.94[ASN][1000 genomes]
rs28617317	0.92[ASN][1000 genomes]
rs2893579	0.88[ASN][1000 genomes]
rs4870987	0.91[ASN][1000 genomes]
rs4870989	0.90[ASN][1000 genomes]
rs4870990	0.90[ASN][1000 genomes]
rs6984670	0.87[ASN][1000 genomes]
rs6993010	0.92[ASN][1000 genomes]
rs6998093	0.92[ASN][1000 genomes]
rs7816751	0.92[ASN][1000 genomes]
rs7828801	0.91[ASN][1000 genomes]
rs7833497	0.91[ASN][1000 genomes]
rs7839993	0.91[ASN][1000 genomes]
rs7841842	0.98[ASN][1000 genomes]
rs975788	0.83[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];1.00[ASN][1000 genomes]
rs979963	0.91[ASN][1000 genomes]
rs979964	0.91[ASN][1000 genomes]
rs979965	0.92[ASN][1000 genomes]
rs979966	0.92[ASN][1000 genomes]
rs986046	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9987182	0.93[ASN][1000 genomes]
rs9987223	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1819408	chr8:127835876-127898165	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv6382	chr8:127845446-127890549	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:127846600-127858200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr8:127846800-127857200	Weak transcription	Fetal Kidney	kidney
3	chr8:127847600-127857200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr8:127847600-127860000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr8:127849600-127856600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr8:127853600-127857800	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr8:127854400-127856600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr8:127854400-127858200	Enhancers	Placenta	Placenta
9	chr8:127854400-127858600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr8:127854800-127856600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr8:127855000-127856400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr8:127855000-127856600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr8:127855000-127856800	Weak transcription	HMEC	breast
14	chr8:127855000-127858200	Weak transcription	Stomach Mucosa	stomach
15	chr8:127855400-127856400	Enhancers	Fetal Lung	lung
16	chr8:127855400-127856800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr8:127855600-127856400	Weak transcription	Lung	lung
18	chr8:127855600-127857000	Weak transcription	Esophagus	oesophagus
19	chr8:127855600-127857000	Weak transcription	Fetal Muscle Leg	muscle
20	chr8:127855600-127857000	Weak transcription	HSMMtube	muscle
21	chr8:127855800-127856400	Enhancers	Adipose Nuclei	Adipose
22	chr8:127855800-127857000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr8:127855800-127857000	Enhancers	NHEK	skin
24	chr8:127856000-127857800	Active TSS	Fetal Muscle Trunk	muscle
25	chr8:127856200-127857200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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