Variant report

Variant	rs16901785
Chromosome Location	chr8:127861604-127861605
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:127858088..127860526-chr8:127861432..127863548,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000253438	Chromatin interaction

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10106550	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10156279	0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10216500	0.85[AMR][1000 genomes]
rs10216660	0.85[AMR][1000 genomes]
rs10216757	0.85[AMR][1000 genomes]
rs10216925	0.85[AMR][1000 genomes]
rs10216939	0.85[AMR][1000 genomes]
rs10505487	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10505488	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10505489	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10505490	0.91[ASN][1000 genomes]
rs10956330	0.93[ASN][1000 genomes]
rs10956331	0.98[ASN][1000 genomes]
rs10956332	0.94[ASN][1000 genomes]
rs11779539	0.96[ASN][1000 genomes]
rs11986860	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11987858	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11989801	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11992578	0.99[ASN][1000 genomes]
rs12545906	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12547157	0.85[AMR][1000 genomes]
rs13248340	0.91[ASN][1000 genomes]
rs13254736	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1400462	0.98[ASN][1000 genomes]
rs16901734	0.85[AMR][1000 genomes]
rs16901776	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16901778	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16901783	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16901792	0.98[ASN][1000 genomes]
rs1873184	0.85[AMR][1000 genomes]
rs1873185	0.85[AMR][1000 genomes]
rs1972123	0.98[ASN][1000 genomes]
rs1973699	0.96[ASN][1000 genomes]
rs28409662	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28617317	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2893579	0.95[ASN][1000 genomes]
rs4870987	0.98[ASN][1000 genomes]
rs4870989	0.97[ASN][1000 genomes]
rs4870990	0.95[ASN][1000 genomes]
rs55814003	0.84[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs6983290	0.85[AMR][1000 genomes]
rs6984670	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6993010	0.97[ASN][1000 genomes]
rs6993972	0.85[AMR][1000 genomes]
rs6998093	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7005373	0.85[AMR][1000 genomes]
rs7012160	0.85[AMR][1000 genomes]
rs7016582	0.85[AMR][1000 genomes]
rs7016606	0.85[AMR][1000 genomes]
rs72722244	0.81[AMR][1000 genomes]
rs72722245	0.81[AMR][1000 genomes]
rs7813029	0.85[AMR][1000 genomes]
rs7816751	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7818682	0.86[ASN][1000 genomes]
rs7827311	0.87[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7828801	0.98[ASN][1000 genomes]
rs7833497	0.98[ASN][1000 genomes]
rs7839993	0.98[ASN][1000 genomes]
rs7841842	0.91[ASN][1000 genomes]
rs975788	0.87[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs979963	0.98[ASN][1000 genomes]
rs979964	0.98[ASN][1000 genomes]
rs979965	0.97[ASN][1000 genomes]
rs979966	0.97[ASN][1000 genomes]
rs986046	0.89[ASN][1000 genomes]
rs9987182	0.88[ASN][1000 genomes]
rs9987223	0.87[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1819408	chr8:127835876-127898165	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv6382	chr8:127845446-127890549	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv831456	chr8:127861583-128025508	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:127857400-127862000	Weak transcription	Fetal Kidney	kidney
2	chr8:127858000-127866400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr8:127858600-127869400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr8:127861200-127861800	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr8:127861400-127861800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr8:127861400-127861800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr8:127861400-127862000	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr8:127861400-127862200	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr8:127861400-127862200	Enhancers	HSMMtube	muscle
10	chr8:127861400-127862800	Enhancers	Fetal Muscle Leg	muscle
11	chr8:127861600-127861800	Enhancers	Psoas Muscle	Psoas

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