Variant report

Variant	rs7816751
Chromosome Location	chr8:127874935-127874936
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10106550	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10156279	0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10216500	0.81[AMR][1000 genomes]
rs10216660	0.81[AMR][1000 genomes]
rs10216757	0.81[AMR][1000 genomes]
rs10216925	0.81[AMR][1000 genomes]
rs10216939	0.81[AMR][1000 genomes]
rs10505487	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10505488	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10505489	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10505490	0.90[ASN][1000 genomes]
rs10956330	0.92[ASN][1000 genomes]
rs10956331	0.99[ASN][1000 genomes]
rs10956332	0.95[ASN][1000 genomes]
rs11779539	0.97[ASN][1000 genomes]
rs11986860	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11987858	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11989801	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11992578	0.98[ASN][1000 genomes]
rs12545906	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12547157	0.81[AMR][1000 genomes]
rs13248340	0.90[ASN][1000 genomes]
rs13254736	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1400462	0.99[ASN][1000 genomes]
rs16901734	0.81[AMR][1000 genomes]
rs16901776	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16901778	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16901783	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16901785	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16901792	0.99[ASN][1000 genomes]
rs1873184	0.81[AMR][1000 genomes]
rs1873185	0.81[AMR][1000 genomes]
rs1972123	0.99[ASN][1000 genomes]
rs1973699	0.97[ASN][1000 genomes]
rs28409662	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28617317	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2893579	0.96[ASN][1000 genomes]
rs4870987	0.99[ASN][1000 genomes]
rs4870989	0.98[ASN][1000 genomes]
rs4870990	0.96[ASN][1000 genomes]
rs55814003	0.84[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs6983290	0.81[AMR][1000 genomes]
rs6984670	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6993010	0.98[ASN][1000 genomes]
rs6993972	0.81[AMR][1000 genomes]
rs6998093	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7005373	0.81[AMR][1000 genomes]
rs7012160	0.81[AMR][1000 genomes]
rs7016582	0.81[AMR][1000 genomes]
rs7016606	0.81[AMR][1000 genomes]
rs7813029	0.81[AMR][1000 genomes]
rs7818682	0.85[ASN][1000 genomes]
rs7825034	0.83[CHD][hapmap]
rs7827311	0.87[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7828801	0.99[ASN][1000 genomes]
rs7833497	0.99[ASN][1000 genomes]
rs7839993	0.99[ASN][1000 genomes]
rs7841842	0.90[ASN][1000 genomes]
rs975788	0.87[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs979963	0.99[ASN][1000 genomes]
rs979964	0.99[ASN][1000 genomes]
rs979965	0.98[ASN][1000 genomes]
rs979966	0.98[ASN][1000 genomes]
rs986046	0.88[ASN][1000 genomes]
rs9987182	0.87[ASN][1000 genomes]
rs9987223	0.86[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1819408	chr8:127835876-127898165	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv6382	chr8:127845446-127890549	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv831456	chr8:127861583-128025508	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:127870600-127876000	Weak transcription	NHEK	skin
2	chr8:127870600-127877400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr8:127870600-127880400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr8:127873600-127878400	Weak transcription	Right Atrium	heart
5	chr8:127874800-127875200	Enhancers	Stomach Mucosa	stomach

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