Variant report

Variant	rs10505490
Chromosome Location	chr8:127847973-127847974
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10106550	0.89[ASN][1000 genomes]
rs10156279	0.88[CHB][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs10505487	0.88[ASN][1000 genomes]
rs10505488	0.85[ASN][1000 genomes]
rs10505489	0.94[ASN][1000 genomes]
rs10956330	0.96[ASN][1000 genomes]
rs10956331	0.89[ASN][1000 genomes]
rs10956332	0.85[ASN][1000 genomes]
rs11779539	0.88[ASN][1000 genomes]
rs11986860	0.90[ASN][1000 genomes]
rs11987858	0.83[ASN][1000 genomes]
rs11989801	0.90[ASN][1000 genomes]
rs11992578	0.90[ASN][1000 genomes]
rs12545906	0.94[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs13248340	1.00[ASN][1000 genomes]
rs1400462	0.89[ASN][1000 genomes]
rs16901776	0.88[CHB][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs16901778	0.88[ASN][1000 genomes]
rs16901783	0.91[ASN][1000 genomes]
rs16901785	0.94[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs16901792	0.89[ASN][1000 genomes]
rs1826083	1.00[CEU][hapmap]
rs1972123	0.89[ASN][1000 genomes]
rs1973699	0.88[ASN][1000 genomes]
rs28409662	0.90[ASN][1000 genomes]
rs28617317	0.88[ASN][1000 genomes]
rs2893579	0.87[ASN][1000 genomes]
rs4870987	0.89[ASN][1000 genomes]
rs4870989	0.88[ASN][1000 genomes]
rs4870990	0.87[ASN][1000 genomes]
rs55814003	0.81[ASN][1000 genomes]
rs6984670	0.87[ASN][1000 genomes]
rs6993010	0.88[ASN][1000 genomes]
rs6998093	0.90[ASN][1000 genomes]
rs7816751	0.90[ASN][1000 genomes]
rs7827311	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7828801	0.89[ASN][1000 genomes]
rs7833497	0.89[ASN][1000 genomes]
rs7839993	0.89[ASN][1000 genomes]
rs7841842	0.95[ASN][1000 genomes]
rs975788	0.83[ASW][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];0.94[JPT][hapmap];0.86[MEX][hapmap];0.96[ASN][1000 genomes]
rs979963	0.89[ASN][1000 genomes]
rs979964	0.89[ASN][1000 genomes]
rs979965	0.88[ASN][1000 genomes]
rs979966	0.88[ASN][1000 genomes]
rs986046	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9987182	0.95[ASN][1000 genomes]
rs9987223	0.93[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1819408	chr8:127835876-127898165	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv6382	chr8:127845446-127890549	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:127844400-127848000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr8:127846200-127851600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr8:127846600-127848000	Enhancers	NHLF	lung
4	chr8:127846600-127849800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr8:127846600-127849800	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr8:127846600-127851600	Weak transcription	Stomach Mucosa	stomach
7	chr8:127846600-127858200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr8:127846800-127848000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr8:127846800-127848000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr8:127846800-127848200	Enhancers	Muscle Satellite Cultured Cells	--
11	chr8:127846800-127851000	Weak transcription	Adipose Nuclei	Adipose
12	chr8:127846800-127851200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr8:127846800-127851400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr8:127846800-127851400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr8:127846800-127851400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr8:127846800-127851400	Weak transcription	HMEC	breast
17	chr8:127846800-127851800	Weak transcription	Gastric	stomach
18	chr8:127846800-127851800	Weak transcription	NHEK	skin
19	chr8:127846800-127852200	Weak transcription	Fetal Heart	heart
20	chr8:127846800-127854000	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr8:127846800-127857200	Weak transcription	Fetal Kidney	kidney
22	chr8:127847000-127850000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr8:127847000-127850800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr8:127847000-127851400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr8:127847000-127854400	Weak transcription	Placenta	Placenta
26	chr8:127847200-127850200	Weak transcription	Fetal Muscle Trunk	muscle
27	chr8:127847600-127849800	Weak transcription	NHDF-Ad	bronchial
28	chr8:127847600-127850000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr8:127847600-127851400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr8:127847600-127857200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr8:127847600-127860000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr8:127847800-127848000	Enhancers	Fetal Lung	lung
33	chr8:127847800-127848200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr8:127847800-127850000	Weak transcription	Fetal Muscle Leg	muscle

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