Variant report

Variant	rs7833497
Chromosome Location	chr8:127866125-127866126
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:127863317..127865201-chr8:127865656..127867797,3	K562	blood:

Extended variants
information (count: 62 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10106550	0.98[ASN][1000 genomes]
rs10156279	0.94[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10505487	0.96[ASN][1000 genomes]
rs10505488	0.87[ASN][1000 genomes]
rs10505489	0.95[ASN][1000 genomes]
rs10505490	0.89[ASN][1000 genomes]
rs10808552	0.81[EUR][1000 genomes]
rs10956330	0.91[ASN][1000 genomes]
rs10956331	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10956332	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10956333	0.95[EUR][1000 genomes]
rs11779539	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11986860	0.99[ASN][1000 genomes]
rs11987858	0.92[ASN][1000 genomes]
rs11989801	0.99[ASN][1000 genomes]
rs11992578	0.97[ASN][1000 genomes]
rs12545906	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs13248340	0.89[ASN][1000 genomes]
rs13254736	0.83[ASN][1000 genomes]
rs1400462	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1400463	0.85[EUR][1000 genomes]
rs16901776	0.94[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs16901778	0.95[ASN][1000 genomes]
rs16901783	0.98[ASN][1000 genomes]
rs16901785	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs16901792	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1972123	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1973699	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28409662	0.97[ASN][1000 genomes]
rs28617317	0.95[ASN][1000 genomes]
rs2893579	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4870987	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4870989	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4870990	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4871743	0.82[CEU][hapmap]
rs55814003	0.82[ASN][1000 genomes]
rs6984670	0.92[ASN][1000 genomes]
rs6989445	0.85[EUR][1000 genomes]
rs6993010	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6998093	0.99[ASN][1000 genomes]
rs7816751	0.99[ASN][1000 genomes]
rs7818682	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7818898	0.81[EUR][1000 genomes]
rs7818978	0.81[EUR][1000 genomes]
rs7819209	0.83[EUR][1000 genomes]
rs7825034	1.00[CEU][hapmap];0.83[CHD][hapmap];0.82[GIH][hapmap];0.97[TSI][hapmap];0.95[EUR][1000 genomes]
rs7827311	0.87[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7828801	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7839993	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7841842	0.89[ASN][1000 genomes]
rs902126	0.81[EUR][1000 genomes]
rs975788	0.87[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs979963	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs979964	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs979965	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs979966	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs986046	0.88[ASN][1000 genomes]
rs9987182	0.86[ASN][1000 genomes]
rs9987223	0.86[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1819408	chr8:127835876-127898165	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv6382	chr8:127845446-127890549	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv831456	chr8:127861583-128025508	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7833497	FAM49B	cis	parietal	SCAN
rs7833497	POU5F1B	cis	cerebellum	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:127858000-127866400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr8:127858600-127869400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr8:127862000-127866200	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr8:127865800-127866200	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr8:127865800-127866600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr8:127865800-127866800	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr8:127865800-127867000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr8:127866000-127866400	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr8:127866000-127866800	Enhancers	H1 Cell Line	embryonic stem cell
10	chr8:127866000-127866800	Enhancers	H9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links