Variant report

Variant	rs7828801
Chromosome Location	chr8:127874399-127874400
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10106550	0.98[ASN][1000 genomes]
rs10156279	0.97[ASN][1000 genomes]
rs10505487	0.96[ASN][1000 genomes]
rs10505488	0.87[ASN][1000 genomes]
rs10505489	0.95[ASN][1000 genomes]
rs10505490	0.89[ASN][1000 genomes]
rs10808552	0.81[EUR][1000 genomes]
rs10956330	0.91[ASN][1000 genomes]
rs10956331	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10956332	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10956333	0.95[EUR][1000 genomes]
rs11779539	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11986860	0.99[ASN][1000 genomes]
rs11987858	0.92[ASN][1000 genomes]
rs11989801	0.99[ASN][1000 genomes]
rs11992578	0.97[ASN][1000 genomes]
rs12545906	0.98[ASN][1000 genomes]
rs13248340	0.89[ASN][1000 genomes]
rs13254736	0.83[ASN][1000 genomes]
rs1400462	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1400463	0.85[EUR][1000 genomes]
rs16901776	0.97[ASN][1000 genomes]
rs16901778	0.95[ASN][1000 genomes]
rs16901783	0.98[ASN][1000 genomes]
rs16901785	0.98[ASN][1000 genomes]
rs16901792	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1972123	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1973699	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28409662	0.97[ASN][1000 genomes]
rs28617317	0.95[ASN][1000 genomes]
rs2893579	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4870987	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4870989	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4870990	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55814003	0.82[ASN][1000 genomes]
rs6984670	0.92[ASN][1000 genomes]
rs6989445	0.85[EUR][1000 genomes]
rs6993010	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6998093	0.99[ASN][1000 genomes]
rs7816751	0.99[ASN][1000 genomes]
rs7818682	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7818898	0.81[EUR][1000 genomes]
rs7818978	0.81[EUR][1000 genomes]
rs7819209	0.83[EUR][1000 genomes]
rs7825034	0.95[EUR][1000 genomes]
rs7827311	0.91[ASN][1000 genomes]
rs7833497	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7839993	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7841842	0.89[ASN][1000 genomes]
rs902126	0.81[EUR][1000 genomes]
rs975788	0.91[ASN][1000 genomes]
rs979963	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs979964	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs979965	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs979966	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs986046	0.88[ASN][1000 genomes]
rs9987182	0.86[ASN][1000 genomes]
rs9987223	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1819408	chr8:127835876-127898165	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv6382	chr8:127845446-127890549	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv831456	chr8:127861583-128025508	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:127870600-127876000	Weak transcription	NHEK	skin
2	chr8:127870600-127877400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr8:127870600-127880400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr8:127873600-127878400	Weak transcription	Right Atrium	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links