Variant report

Variant	rs902126
Chromosome Location	chr8:127861121-127861122
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10046732	0.87[EUR][1000 genomes]
rs10090865	0.81[AMR][1000 genomes]
rs10102061	0.87[EUR][1000 genomes]
rs10102079	0.87[EUR][1000 genomes]
rs10505493	0.87[EUR][1000 genomes]
rs10808552	0.90[EUR][1000 genomes]
rs10956332	0.81[EUR][1000 genomes]
rs10956334	0.85[EUR][1000 genomes]
rs10956337	0.87[EUR][1000 genomes]
rs10956339	0.87[EUR][1000 genomes]
rs11779539	0.81[EUR][1000 genomes]
rs11985141	0.87[EUR][1000 genomes]
rs11988555	0.87[EUR][1000 genomes]
rs12334411	0.87[EUR][1000 genomes]
rs12334639	0.87[EUR][1000 genomes]
rs12335215	0.87[EUR][1000 genomes]
rs1400462	0.81[EUR][1000 genomes]
rs1400463	0.95[EUR][1000 genomes]
rs1467191	0.87[EUR][1000 genomes]
rs1467192	0.87[EUR][1000 genomes]
rs1467193	0.87[EUR][1000 genomes]
rs16901792	0.81[EUR][1000 genomes]
rs1972123	0.81[EUR][1000 genomes]
rs2012363	0.80[EUR][1000 genomes]
rs2893579	0.81[EUR][1000 genomes]
rs4870987	0.81[EUR][1000 genomes]
rs4870989	0.81[EUR][1000 genomes]
rs4870990	0.81[EUR][1000 genomes]
rs4871743	0.82[CEU][hapmap];0.88[GIH][hapmap];0.86[MEX][hapmap];0.83[AMR][1000 genomes]
rs4871745	0.87[EUR][1000 genomes]
rs4871746	0.87[EUR][1000 genomes]
rs4871747	0.87[EUR][1000 genomes]
rs6985700	0.87[EUR][1000 genomes]
rs6985873	0.87[EUR][1000 genomes]
rs6986096	0.87[EUR][1000 genomes]
rs6989445	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6993010	0.81[EUR][1000 genomes]
rs6997140	0.87[EUR][1000 genomes]
rs7818898	0.90[EUR][1000 genomes]
rs7818978	0.90[EUR][1000 genomes]
rs7819108	0.89[EUR][1000 genomes]
rs7819209	0.92[EUR][1000 genomes]
rs7825034	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs7827017	0.87[EUR][1000 genomes]
rs7828801	0.81[EUR][1000 genomes]
rs7833497	0.81[EUR][1000 genomes]
rs7839993	0.81[EUR][1000 genomes]
rs979963	0.81[EUR][1000 genomes]
rs979964	0.81[EUR][1000 genomes]
rs979965	0.81[EUR][1000 genomes]
rs979966	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1819408	chr8:127835876-127898165	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv6382	chr8:127845446-127890549	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs902126	POU5F1B	cis	cerebellum	SCAN
rs902126	ASAP1	cis	parietal	SCAN
rs902126	FER1L6	cis	cerebellum	SCAN
rs902126	FAM49B	cis	parietal	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:127857400-127862000	Weak transcription	Fetal Kidney	kidney
2	chr8:127857600-127861400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr8:127858000-127866400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr8:127858600-127869400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr8:127859400-127861200	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr8:127859800-127861400	Weak transcription	HSMMtube	muscle
7	chr8:127860200-127861400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr8:127860200-127861400	Weak transcription	Fetal Muscle Leg	muscle
9	chr8:127860200-127861600	Weak transcription	Psoas Muscle	Psoas
10	chr8:127860400-127861200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr8:127861000-127861200	Enhancers	Muscle Satellite Cultured Cells	--
12	chr8:127861000-127861200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr8:127861000-127861200	Enhancers	HMEC	breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links