Variant report

Variant	rs2012363
Chromosome Location	chr8:127878153-127878154
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10808552	0.80[EUR][1000 genomes]
rs12677423	0.83[EUR][1000 genomes]
rs1400463	0.85[EUR][1000 genomes]
rs6989445	0.85[EUR][1000 genomes]
rs7818898	0.80[EUR][1000 genomes]
rs7818978	0.80[EUR][1000 genomes]
rs7819209	0.82[EUR][1000 genomes]
rs902126	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1819408	chr8:127835876-127898165	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv6382	chr8:127845446-127890549	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv831456	chr8:127861583-128025508	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:127870600-127880400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr8:127873600-127878400	Weak transcription	Right Atrium	heart
3	chr8:127876400-127880400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr8:127876400-127881200	Weak transcription	NHEK	skin
5	chr8:127876600-127886400	Weak transcription	Fetal Muscle Leg	muscle
6	chr8:127877800-127878200	Weak transcription	Stomach Mucosa	stomach
7	chr8:127878000-127885800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links