Variant report

Variant	rs16901778
Chromosome Location	chr8:127859974-127859975
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10106550	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10156279	0.93[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10216500	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10216660	1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10216757	1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10216925	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10216939	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10505487	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10505488	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10505489	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10505490	0.88[ASN][1000 genomes]
rs10956330	0.92[ASN][1000 genomes]
rs10956331	0.95[ASN][1000 genomes]
rs10956332	0.91[ASN][1000 genomes]
rs11779539	0.94[ASN][1000 genomes]
rs11986860	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11987858	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11989801	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11992578	0.98[ASN][1000 genomes]
rs12545906	0.88[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12547157	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs13248340	0.88[ASN][1000 genomes]
rs13254736	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1400462	0.95[ASN][1000 genomes]
rs16901734	1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs16901776	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16901783	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16901785	0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16901792	0.95[ASN][1000 genomes]
rs1873184	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1873185	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1972123	0.95[ASN][1000 genomes]
rs1973699	0.94[ASN][1000 genomes]
rs28409662	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28617317	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2893579	0.93[ASN][1000 genomes]
rs4870987	0.95[ASN][1000 genomes]
rs4870989	0.95[ASN][1000 genomes]
rs4870990	0.95[ASN][1000 genomes]
rs55814003	0.81[ASN][1000 genomes]
rs6983290	1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6984670	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6993010	0.96[ASN][1000 genomes]
rs6993972	1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6998093	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7005373	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7012160	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7016582	1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7016606	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs72722244	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs72722245	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7813029	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7816751	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7818682	0.83[ASN][1000 genomes]
rs7827311	0.87[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7828801	0.95[ASN][1000 genomes]
rs7833497	0.95[ASN][1000 genomes]
rs7839993	0.95[ASN][1000 genomes]
rs7841842	0.90[ASN][1000 genomes]
rs975788	0.87[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs979963	0.95[ASN][1000 genomes]
rs979964	0.95[ASN][1000 genomes]
rs979965	0.96[ASN][1000 genomes]
rs979966	0.96[ASN][1000 genomes]
rs986046	0.87[ASN][1000 genomes]
rs9987182	0.85[ASN][1000 genomes]
rs9987223	0.87[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1819408	chr8:127835876-127898165	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv6382	chr8:127845446-127890549	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:127847600-127860000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:127857400-127862000	Weak transcription	Fetal Kidney	kidney
3	chr8:127857600-127861400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr8:127857800-127860200	Enhancers	Fetal Muscle Leg	muscle
5	chr8:127858000-127860200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr8:127858000-127860200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr8:127858000-127866400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr8:127858400-127861000	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr8:127858600-127860000	Weak transcription	HMEC	breast
10	chr8:127858600-127861000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr8:127858600-127869400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr8:127859000-127860000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr8:127859000-127860200	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr8:127859400-127860000	Weak transcription	Psoas Muscle	Psoas
15	chr8:127859400-127861200	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr8:127859800-127860000	Weak transcription	Pancreas	Pancrea
17	chr8:127859800-127861400	Weak transcription	HSMMtube	muscle

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