Variant report

Variant	rs13254736
Chromosome Location	chr8:127879454-127879455
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:127872138..127873999-chr8:127878961..127881315,2	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10106550	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10156279	0.81[CHB][hapmap];0.87[JPT][hapmap];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10216757	1.00[GIH][hapmap]
rs10505487	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10505488	0.96[EUR][1000 genomes]
rs10505489	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10956331	0.83[ASN][1000 genomes]
rs10956333	0.85[ASN][1000 genomes]
rs11779539	0.85[ASN][1000 genomes]
rs11986860	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11987858	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11989801	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11992578	0.84[ASN][1000 genomes]
rs12545906	0.87[CHB][hapmap];0.87[JPT][hapmap];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1400462	0.83[ASN][1000 genomes]
rs16901734	1.00[GIH][hapmap]
rs16901776	0.81[CHB][hapmap];0.87[JPT][hapmap];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16901778	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16901783	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16901785	0.87[CHB][hapmap];0.87[JPT][hapmap];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16901792	0.83[ASN][1000 genomes]
rs1972123	0.83[ASN][1000 genomes]
rs1973699	0.85[ASN][1000 genomes]
rs28409662	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28617317	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2893579	0.84[ASN][1000 genomes]
rs4870987	0.83[ASN][1000 genomes]
rs4870989	0.82[ASN][1000 genomes]
rs4870990	0.80[ASN][1000 genomes]
rs6984670	0.88[EUR][1000 genomes]
rs6993010	0.82[ASN][1000 genomes]
rs6998093	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7816751	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7818682	0.97[ASN][1000 genomes]
rs7827311	0.87[JPT][hapmap]
rs7828801	0.83[ASN][1000 genomes]
rs7833497	0.83[ASN][1000 genomes]
rs7839993	0.83[ASN][1000 genomes]
rs975788	0.87[JPT][hapmap]
rs979963	0.83[ASN][1000 genomes]
rs979964	0.83[ASN][1000 genomes]
rs979965	0.82[ASN][1000 genomes]
rs979966	0.82[ASN][1000 genomes]
rs9987223	0.87[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1819408	chr8:127835876-127898165	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv6382	chr8:127845446-127890549	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv831456	chr8:127861583-128025508	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:127870600-127880400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr8:127876400-127880400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr8:127876400-127881200	Weak transcription	NHEK	skin
4	chr8:127876600-127886400	Weak transcription	Fetal Muscle Leg	muscle
5	chr8:127878000-127885800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr8:127878600-127889000	Weak transcription	Right Atrium	heart
7	chr8:127878800-127880800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr8:127878800-127881200	Weak transcription	Stomach Mucosa	stomach

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