Variant report

Variant	rs16903733
Chromosome Location	chr5:14915178-14915179
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr5:14915088-14915349	HepG2	liver:	n/a	chr5:14915227-14915238
2	CEBPB	chr5:14914862-14915217	IMR90	lung:	n/a	n/a
3	POLR2A	chr5:14915143-14915182	MCF10A-Er-Src	breast:	n/a	n/a
4	FOS	chr5:14914959-14915456	MCF10A-Er-Src	breast:	n/a	n/a
5	FOS	chr5:14915043-14915388	Hela-S3	cervix:	n/a	n/a
6	JUND	chr5:14914894-14915561	SK-N-SH	brain:	n/a	chr5:14915227-14915238
7	GATA3	chr5:14914745-14915574	SK-N-SH	brain:	n/a	n/a
8	FOS	chr5:14915032-14915437	MCF10A-Er-Src	breast:	n/a	n/a
9	MAFK	chr5:14915031-14915333	IMR90	lung:	n/a	n/a
10	JUND	chr5:14914634-14915542	SK-N-SH	brain:	n/a	chr5:14915227-14915238
11	FOSL2	chr5:14914913-14915398	SK-N-SH	brain:	n/a	n/a
12	POLR2A	chr5:14915016-14915397	U87	brain:	n/a	n/a
13	GATA3	chr5:14914779-14915590	SK-N-SH	brain:	n/a	n/a
14	SMC3	chr5:14914996-14915337	Hela-S3	cervix:	n/a	n/a
15	EP300	chr5:14914813-14915283	SK-N-SH_RA	brain:	n/a	n/a
16	MYC	chr5:14914982-14915376	MCF10A-Er-Src	breast:	n/a	n/a
17	RFX5	chr5:14914956-14915407	Hela-S3	cervix:	n/a	n/a
18	EP300	chr5:14914824-14915271	SK-N-SH_RA	brain:	n/a	n/a
19	JUND	chr5:14914896-14915397	Hela-S3	cervix:	n/a	chr5:14915227-14915238
20	TCF12	chr5:14914845-14915499	SK-N-SH	brain:	n/a	n/a
21	MAFK	chr5:14915035-14915239	HepG2	liver:	n/a	n/a
22	FOS	chr5:14914982-14915445	MCF10A-Er-Src	breast:	n/a	n/a
23	FOS	chr5:14914923-14915413	MCF10A-Er-Src	breast:	n/a	n/a
24	FOSL1	chr5:14915033-14915374	HCT-116	colon:	n/a	n/a
25	JUND	chr5:14914851-14915522	SK-N-SH	brain:	n/a	chr5:14915227-14915238
26	MAFK	chr5:14915000-14915340	Hela-S3	cervix:	n/a	n/a
27	POLR2A	chr5:14914989-14915384	SK-N-SH	brain:	n/a	n/a
28	FOSL2	chr5:14914988-14915416	SK-N-SH	brain:	n/a	n/a
29	CEBPB	chr5:14914768-14915350	Hela-S3	cervix:	n/a	n/a
30	TCF7L2	chr5:14914986-14915264	Hela-S3	cervix:	n/a	n/a
31	MYC	chr5:14915040-14915336	MCF10A-Er-Src	breast:	n/a	n/a
32	TCF12	chr5:14914792-14915577	SK-N-SH	brain:	n/a	n/a
33	STAT3	chr5:14914868-14915318	Hela-S3	cervix:	n/a	n/a
34	MAFK	chr5:14915108-14915256	HepG2	liver:	n/a	n/a
35	PBX3	chr5:14914899-14915345	SK-N-SH	brain:	n/a	n/a
36	PBX3	chr5:14914733-14915512	SK-N-SH	brain:	n/a	n/a
37	NFIC	chr5:14914797-14915499	SK-N-SH	brain:	n/a	n/a
38	EP300	chr5:14914912-14915333	Hela-S3	cervix:	n/a	n/a
39	TCF7L2	chr5:14915167-14915747	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
ENSG00000212036	TF binding region

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs16903734	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16903739	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73066932	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7341047	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs835136	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs865036	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs966987	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018187	chr5:14385164-15127103	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv830212	chr5:14784197-14966683	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
3	esv2755538	chr5:14814900-14927500	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	nsv530221	chr5:14859687-15364470	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
5	nsv432717	chr5:14887400-15126500	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv1017579	chr5:14888997-15194335	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv597261	chr5:14913369-14962587	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:14912000-14916400	Enhancers	Placenta Amnion	Placenta Amnion
2	chr5:14912000-14919200	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr5:14912600-14915600	Enhancers	Osteobl	bone
4	chr5:14913000-14916200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr5:14913000-14916400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr5:14914000-14915600	Weak transcription	Placenta	Placenta
7	chr5:14914400-14916000	Enhancers	NHDF-Ad	bronchial
8	chr5:14914400-14916200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr5:14914400-14916200	Enhancers	Hela-S3	cervix
10	chr5:14914400-14916400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr5:14914400-14916800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr5:14914400-14919000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr5:14914400-14919000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr5:14914600-14916400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr5:14914600-14916600	Enhancers	HepG2	liver
16	chr5:14914600-14916600	Enhancers	NH-A	brain
17	chr5:14914800-14915200	Enhancers	Primary T helper cells PMA-I stimulated	--
18	chr5:14914800-14915200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr5:14914800-14915800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr5:14914800-14915800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
21	chr5:14914800-14916000	Enhancers	HSMM	muscle
22	chr5:14914800-14916400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr5:14914800-14916400	Enhancers	Fetal Heart	heart
24	chr5:14914800-14918800	Enhancers	HMEC	breast
25	chr5:14914800-14922600	Weak transcription	Spleen	Spleen
26	chr5:14915000-14915400	Enhancers	Muscle Satellite Cultured Cells	--
27	chr5:14915000-14915400	Weak transcription	HSMMtube	muscle
28	chr5:14915000-14916200	Enhancers	NHEK	skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links