Variant report

Variant	rs865036
Chromosome Location	chr5:14927022-14927023
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:14664017..14666090-chr5:14925708..14927348,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000261360	Chromatin interaction
ENSG00000154124	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs16903733	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs16903734	0.90[JPT][hapmap]
rs2591509	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2591513	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2592012	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7341047	0.82[CHB][hapmap]
rs835136	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018187	chr5:14385164-15127103	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv830212	chr5:14784197-14966683	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
3	esv2755538	chr5:14814900-14927500	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	nsv530221	chr5:14859687-15364470	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
5	nsv432717	chr5:14887400-15126500	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv1017579	chr5:14888997-15194335	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv597261	chr5:14913369-14962587	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
8	nsv881238	chr5:14917813-14950952	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
9	nsv881343	chr5:14917813-14956699	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
10	nsv881445	chr5:14917813-14960920	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
11	nsv881333	chr5:14924458-14962587	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:14916600-14929200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr5:14924000-14929400	Weak transcription	Fetal Heart	heart
3	chr5:14924600-14927200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
4	chr5:14924800-14927200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr5:14924800-14927400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr5:14924800-14927400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr5:14925000-14927200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
8	chr5:14925200-14927200	Enhancers	HMEC	breast
9	chr5:14925200-14927400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr5:14925400-14927200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr5:14925400-14927200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr5:14925400-14927400	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr5:14925400-14927400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr5:14925400-14927400	Enhancers	NHDF-Ad	bronchial
15	chr5:14925400-14931000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr5:14925600-14927400	Enhancers	Primary T cells fromperipheralblood	blood
17	chr5:14926000-14927200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr5:14926000-14927200	Enhancers	Right Atrium	heart
19	chr5:14926000-14927400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr5:14926200-14927200	Enhancers	Primary T cells from cord blood	blood
21	chr5:14926200-14927200	Enhancers	Placenta	Placenta
22	chr5:14926400-14929200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr5:14926600-14927400	Enhancers	Muscle Satellite Cultured Cells	--
24	chr5:14926600-14927400	Enhancers	Dnd41	blood
25	chr5:14926600-14927400	Enhancers	Osteobl	bone
26	chr5:14926600-14927600	Weak transcription	Lung	lung
27	chr5:14926600-14927600	Enhancers	NH-A	brain
28	chr5:14926600-14929200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr5:14926600-14929400	Weak transcription	Left Ventricle	heart
30	chr5:14926800-14928400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr5:14926800-14929200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr5:14927000-14929200	Weak transcription	NHLF	lung

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