Variant report

Variant	rs16904084
Chromosome Location	chr8:130488965-130488966
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1108353	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17262815	0.82[EUR][1000 genomes]
rs1897449	0.82[EUR][1000 genomes]
rs2017455	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61684115	0.82[EUR][1000 genomes]
rs67674260	0.82[EUR][1000 genomes]
rs72714253	0.82[EUR][1000 genomes]
rs72714255	0.83[EUR][1000 genomes]
rs73391885	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs736863	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs755958	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7839438	0.81[CEU][hapmap];0.87[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015611	chr8:130449321-130502086	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv971607	chr8:130487651-130489151	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130475800-130492000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:130484600-130489000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr8:130485600-130491400	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr8:130487600-130489000	Enhancers	Fetal Thymus	thymus
5	chr8:130487800-130494800	Genic enhancers	K562	blood
6	chr8:130488000-130489400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr8:130488000-130489400	Enhancers	Dnd41	blood
8	chr8:130488000-130492600	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr8:130488200-130489000	Enhancers	Thymus	Thymus
10	chr8:130488200-130491600	Weak transcription	Stomach Smooth Muscle	stomach
11	chr8:130488400-130491400	Weak transcription	Colon Smooth Muscle	Colon
12	chr8:130488400-130491800	Weak transcription	Rectal Smooth Muscle	rectum
13	chr8:130488800-130489200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr8:130488800-130491600	Weak transcription	Fetal Stomach	stomach

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links