Variant report

Variant	rs16904129
Chromosome Location	chr8:130634936-130634937
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12681229	0.87[CEU][hapmap]
rs1433585	0.93[CEU][hapmap];0.86[GIH][hapmap];0.84[MEX][hapmap];0.82[TSI][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1583333	0.80[CEU][hapmap]
rs16904123	0.80[CEU][hapmap]
rs16904126	0.84[ASW][hapmap];0.93[CEU][hapmap];0.86[GIH][hapmap];0.82[TSI][hapmap];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17181607	0.83[CHB][hapmap]
rs4487716	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58811566	0.83[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs72716379	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv612230	chr8:130624121-130661901	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130633000-130636800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr8:130634400-130635200	Enhancers	Dnd41	blood
3	chr8:130634600-130635000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr8:130634600-130635000	Active TSS	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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