Variant report

Variant	rs16904134
Chromosome Location	chr8:130653624-130653625
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs16904117	1.00[CHD][hapmap]
rs16904131	1.00[ASW][hapmap];1.00[YRI][hapmap]
rs16904132	1.00[ASW][hapmap];1.00[YRI][hapmap]
rs16904137	1.00[ASW][hapmap];1.00[YRI][hapmap]
rs7013707	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv612230	chr8:130624121-130661901	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130651000-130654400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr8:130651000-130655400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr8:130651400-130654800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr8:130651600-130654600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr8:130652600-130656000	Weak transcription	Fetal Lung	lung
6	chr8:130653000-130653800	Enhancers	Brain Angular Gyrus	brain
7	chr8:130653000-130654000	Weak transcription	Fetal Muscle Leg	muscle
8	chr8:130653400-130654800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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