Variant report

Variant	rs16904131
Chromosome Location	chr8:130651306-130651307
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs16904132	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16904134	1.00[ASW][hapmap];1.00[YRI][hapmap]
rs16904137	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6995255	1.00[MKK][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6998849	1.00[AMR][1000 genomes]
rs7001527	1.00[AMR][1000 genomes]
rs7013707	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7017100	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7828399	1.00[AMR][1000 genomes]
rs7846460	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv612230	chr8:130624121-130661901	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130636800-130651600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr8:130640200-130651600	Weak transcription	Fetal Muscle Leg	muscle
3	chr8:130650000-130651400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr8:130651000-130654400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr8:130651000-130655400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links