Variant report

Variant	rs6998849
Chromosome Location	chr8:130669509-130669510
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs16904131	1.00[AMR][1000 genomes]
rs16904132	1.00[AMR][1000 genomes]
rs16904137	1.00[AMR][1000 genomes]
rs6995255	1.00[AMR][1000 genomes]
rs7001527	1.00[AMR][1000 genomes]
rs7013707	1.00[AMR][1000 genomes]
rs7017100	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7828399	1.00[AMR][1000 genomes]
rs7846460	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891446	chr8:130656205-130710638	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130668800-130670200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
2	chr8:130669200-130671400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links