Variant report

Variant	rs16904207
Chromosome Location	chr8:131186762-131186763
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10085959	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs10087217	0.87[ASW][hapmap]
rs10088575	0.81[AFR][1000 genomes]
rs10089819	0.82[YRI][hapmap]
rs10097893	0.94[ASW][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];0.83[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs11986237	0.81[AFR][1000 genomes]
rs11988989	0.85[YRI][hapmap];0.85[AFR][1000 genomes]
rs1426101	0.92[YRI][hapmap];0.80[AFR][1000 genomes]
rs16904211	0.88[YRI][hapmap];0.98[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs2670890	0.80[YRI][hapmap];0.81[AFR][1000 genomes]
rs28491737	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs28620907	0.92[AMR][1000 genomes]
rs55756220	0.83[AFR][1000 genomes]
rs6470801	0.83[ASW][hapmap];0.83[LWK][hapmap];0.88[YRI][hapmap]
rs7004884	0.81[ASW][hapmap];0.82[LWK][hapmap];0.85[YRI][hapmap]
rs7008180	0.87[YRI][hapmap]
rs7008507	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869334	chr8:131025093-131651487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv915580	chr8:131025093-131667578	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv465810	chr8:131039109-131331012	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv612234	chr8:131039109-131331012	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv533085	chr8:131042781-131755007	Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
6	nsv831461	chr8:131159819-131302900	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:131116000-131193800	Strong transcription	Primary neutrophils fromperipheralblood	blood
2	chr8:131128800-131186800	Weak transcription	Fetal Brain Male	brain
3	chr8:131146600-131206000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr8:131147400-131194400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr8:131147600-131199800	Weak transcription	Pancreas	Pancrea
6	chr8:131148000-131194400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr8:131152800-131193600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr8:131155200-131206800	Weak transcription	Psoas Muscle	Psoas
9	chr8:131156200-131194800	Weak transcription	Fetal Kidney	kidney
10	chr8:131156600-131194200	Weak transcription	GM12878-XiMat	blood
11	chr8:131159400-131194000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr8:131162600-131189600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr8:131163000-131198400	Weak transcription	Fetal Heart	heart
14	chr8:131164400-131196600	Weak transcription	Brain Substantia Nigra	brain
15	chr8:131165400-131194200	Strong transcription	Primary monocytes fromperipheralblood	blood
16	chr8:131166200-131193400	Strong transcription	Primary T cells from cord blood	blood
17	chr8:131166200-131194000	Strong transcription	Monocytes-CD14+_RO01746	blood
18	chr8:131169600-131194400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr8:131171000-131208600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr8:131172200-131198800	Weak transcription	Small Intestine	intestine
21	chr8:131172200-131211600	Weak transcription	Rectal Smooth Muscle	rectum
22	chr8:131172600-131186800	Weak transcription	Colonic Mucosa	Colon
23	chr8:131172600-131199800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr8:131172600-131206800	Weak transcription	Esophagus	oesophagus
25	chr8:131172800-131210800	Weak transcription	Duodenum Mucosa	Duodenum
26	chr8:131173000-131198600	Weak transcription	Brain Angular Gyrus	brain
27	chr8:131173600-131206600	Weak transcription	Dnd41	blood
28	chr8:131174600-131192800	Weak transcription	HepG2	liver
29	chr8:131174600-131198800	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr8:131175400-131206000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr8:131177600-131191600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr8:131177800-131191200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr8:131177800-131192000	Strong transcription	Osteobl	bone
34	chr8:131179000-131194600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr8:131179000-131198800	Weak transcription	Fetal Lung	lung
36	chr8:131179000-131208600	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr8:131179200-131194600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr8:131179200-131208600	Weak transcription	Fetal Brain Female	brain
39	chr8:131179400-131191400	Weak transcription	Brain Anterior Caudate	brain
40	chr8:131179400-131193800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
41	chr8:131179400-131197200	Weak transcription	Brain Hippocampus Middle	brain
42	chr8:131179400-131199800	Weak transcription	Lung	lung
43	chr8:131179600-131192600	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr8:131179600-131194800	Weak transcription	Colon Smooth Muscle	Colon
45	chr8:131179600-131198800	Weak transcription	Fetal Intestine Small	intestine
46	chr8:131179600-131199800	Weak transcription	Spleen	Spleen
47	chr8:131179600-131218400	Weak transcription	Thymus	Thymus
48	chr8:131179800-131189600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
49	chr8:131179800-131190800	Weak transcription	Placenta Amnion	Placenta Amnion
50	chr8:131179800-131191200	Weak transcription	Rectal Mucosa Donor 29	rectum

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