Variant report

Variant	rs6470801
Chromosome Location	chr8:131123753-131123754
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10088575	0.86[AFR][1000 genomes]
rs10089819	0.94[ASW][hapmap];0.96[CEU][hapmap];0.93[CHB][hapmap];0.89[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.92[YRI][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10091450	0.88[ASW][hapmap];0.83[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.86[TSI][hapmap];0.87[ASN][1000 genomes]
rs10097893	0.93[LWK][hapmap];0.81[YRI][hapmap]
rs10100892	0.83[ASW][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.91[TSI][hapmap];0.81[YRI][hapmap];0.91[ASN][1000 genomes]
rs10101611	0.82[AFR][1000 genomes]
rs1031474	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1031475	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10956512	0.87[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[YRI][hapmap];0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11774943	0.94[JPT][hapmap]
rs11986237	0.86[AFR][1000 genomes]
rs11988989	0.96[YRI][hapmap];0.87[AFR][1000 genomes]
rs12679149	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13269464	0.89[CHD][hapmap]
rs1426101	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.90[ASN][1000 genomes]
rs1563165	0.94[JPT][hapmap]
rs16904207	0.83[ASW][hapmap];0.83[LWK][hapmap];0.88[YRI][hapmap]
rs16904211	1.00[YRI][hapmap]
rs2554369	0.88[ASW][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.94[GIH][hapmap];0.94[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];0.88[TSI][hapmap]
rs2670885	0.93[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs2670888	1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs2670890	1.00[CHB][hapmap];0.94[JPT][hapmap];0.92[YRI][hapmap];0.80[ASN][1000 genomes]
rs2670891	0.85[ASN][1000 genomes]
rs2791338	1.00[CHB][hapmap];0.94[JPT][hapmap];0.81[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs2791342	1.00[CHB][hapmap];0.91[CHD][hapmap];0.94[GIH][hapmap];0.94[JPT][hapmap];0.96[MEX][hapmap];0.88[TSI][hapmap];0.80[ASN][1000 genomes]
rs2791343	0.87[CEU][hapmap]
rs28380096	0.82[AFR][1000 genomes]
rs28495072	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28620907	0.80[AFR][1000 genomes]
rs55756220	0.84[AFR][1000 genomes]
rs6415510	0.83[CEU][hapmap];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6470800	0.86[CHD][hapmap]
rs6470802	0.89[CHD][hapmap]
rs6470804	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7003309	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];0.97[TSI][hapmap];0.85[YRI][hapmap];0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7004884	1.00[ASW][hapmap];0.87[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.93[LWK][hapmap];0.87[MEX][hapmap];0.92[MKK][hapmap];0.91[TSI][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7008180	0.95[YRI][hapmap];0.81[AFR][1000 genomes]
rs7008507	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7817803	0.83[CHD][hapmap];0.84[MEX][hapmap]
rs7839523	0.85[CHD][hapmap];0.84[MEX][hapmap]
rs7846376	0.83[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.94[GIH][hapmap];0.94[JPT][hapmap];0.96[MEX][hapmap];0.94[TSI][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9297805	0.83[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv612231	chr8:130868212-131132592	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv524349	chr8:130868363-131132592	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv869334	chr8:131025093-131651487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv915580	chr8:131025093-131667578	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv465810	chr8:131039109-131331012	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
6	nsv612234	chr8:131039109-131331012	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
7	nsv533085	chr8:131042781-131755007	Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:131076200-131170600	Weak transcription	Small Intestine	intestine
2	chr8:131105800-131124000	Weak transcription	Fetal Brain Male	brain
3	chr8:131109800-131123800	Weak transcription	Gastric	stomach
4	chr8:131113000-131142000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr8:131113400-131128200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr8:131114400-131138000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr8:131114600-131137200	Strong transcription	A549	lung
8	chr8:131114800-131130800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr8:131115200-131137600	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr8:131115800-131138200	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr8:131116000-131141400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr8:131116000-131141400	Strong transcription	Primary T cells from cord blood	blood
13	chr8:131116000-131193800	Strong transcription	Primary neutrophils fromperipheralblood	blood
14	chr8:131116600-131132000	Strong transcription	Primary T cells fromperipheralblood	blood
15	chr8:131116600-131133200	Strong transcription	Muscle Satellite Cultured Cells	--
16	chr8:131116800-131124000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr8:131117400-131130800	Strong transcription	Hela-S3	cervix
18	chr8:131117400-131132800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr8:131117400-131137200	Strong transcription	NHLF	lung
20	chr8:131117600-131133400	Strong transcription	Fetal Brain Female	brain
21	chr8:131117600-131136800	Strong transcription	Stomach Smooth Muscle	stomach
22	chr8:131118000-131125200	Strong transcription	Fetal Muscle Trunk	muscle
23	chr8:131118000-131128600	Strong transcription	Fetal Stomach	stomach
24	chr8:131118000-131130800	Strong transcription	Sigmoid Colon	Sigmoid Colon
25	chr8:131118000-131133200	Strong transcription	Primary T helper cells fromperipheralblood	blood
26	chr8:131118000-131136000	Strong transcription	Thymus	Thymus
27	chr8:131118000-131141000	Strong transcription	Cortex derived primary cultured neurospheres	brain
28	chr8:131118200-131129800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
29	chr8:131118200-131131000	Strong transcription	Rectal Mucosa Donor 29	rectum
30	chr8:131118400-131125000	Strong transcription	HSMM	muscle
31	chr8:131118400-131129200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr8:131118400-131131000	Strong transcription	Duodenum Smooth Muscle	Duodenum
33	chr8:131118400-131140400	Strong transcription	Placenta	Placenta
34	chr8:131118400-131140800	Strong transcription	Primary B cells from peripheral blood	blood
35	chr8:131118400-131143600	Weak transcription	Stomach Mucosa	stomach
36	chr8:131118600-131137800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr8:131118600-131140800	Strong transcription	Primary B cells from cord blood	blood
38	chr8:131118800-131129600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
39	chr8:131118800-131131400	Strong transcription	Primary T helper cells PMA-I stimulated	--
40	chr8:131118800-131140200	Strong transcription	Fetal Thymus	thymus
41	chr8:131118800-131141000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
42	chr8:131119000-131130200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr8:131119000-131137400	Strong transcription	Osteobl	bone
44	chr8:131119200-131125200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr8:131119200-131125200	Strong transcription	NH-A	brain
46	chr8:131119200-131133400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr8:131119200-131136000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr8:131119200-131137200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr8:131119200-131138000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr8:131119400-131124600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links