Variant report

Variant	rs6415510
Chromosome Location	chr8:131211679-131211680
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:131207362..131209756-chr8:131210863..131213512,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10089819	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10091450	0.91[CEU][hapmap];0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10100892	0.95[CEU][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1031474	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1031475	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10956512	0.95[CEU][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12679149	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1426101	0.95[CEU][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16904259	0.87[CEU][hapmap]
rs2554369	0.87[CEU][hapmap];0.82[ASN][1000 genomes]
rs2670885	0.95[CEU][hapmap];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2670888	0.95[CEU][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2670890	0.91[CEU][hapmap];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2670891	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2791338	0.95[CEU][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2791342	0.87[CEU][hapmap];0.84[ASN][1000 genomes]
rs2791343	0.80[CEU][hapmap];0.82[ASN][1000 genomes]
rs2791350	0.95[CEU][hapmap];0.83[EUR][1000 genomes]
rs28495072	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2943086	0.95[CEU][hapmap];0.87[EUR][1000 genomes]
rs6470801	0.83[CEU][hapmap];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6470804	0.84[CEU][hapmap];0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7003309	0.83[CEU][hapmap];0.86[ASN][1000 genomes]
rs7004884	0.95[CEU][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7008507	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7846376	0.83[CEU][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9297805	0.91[CEU][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869334	chr8:131025093-131651487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv915580	chr8:131025093-131667578	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv465810	chr8:131039109-131331012	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv612234	chr8:131039109-131331012	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv533085	chr8:131042781-131755007	Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
6	nsv831461	chr8:131159819-131302900	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv870148	chr8:131206342-131373989	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:131179600-131218400	Weak transcription	Thymus	Thymus
2	chr8:131181000-131224600	Weak transcription	Hela-S3	cervix
3	chr8:131181200-131229000	Weak transcription	Aorta	Aorta
4	chr8:131195000-131224200	Weak transcription	Stomach Smooth Muscle	stomach
5	chr8:131195200-131212400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr8:131199200-131216800	Weak transcription	Stomach Mucosa	stomach
7	chr8:131199200-131229200	Weak transcription	Fetal Lung	lung
8	chr8:131200200-131212600	Weak transcription	Liver	Liver
9	chr8:131200600-131215600	Weak transcription	Fetal Muscle Leg	muscle
10	chr8:131200600-131218400	Weak transcription	HepG2	liver
11	chr8:131200600-131224600	Weak transcription	Fetal Muscle Trunk	muscle
12	chr8:131200600-131224800	Weak transcription	Placenta	Placenta
13	chr8:131200600-131246600	Weak transcription	Pancreas	Pancrea
14	chr8:131205200-131215400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr8:131206000-131212200	Enhancers	Brain Substantia Nigra	brain
16	chr8:131206200-131213400	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr8:131206600-131211800	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr8:131207000-131212000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr8:131207000-131212600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr8:131207200-131213200	Weak transcription	GM12878-XiMat	blood
21	chr8:131207200-131215600	Weak transcription	Lung	lung
22	chr8:131207400-131212200	Weak transcription	Primary hematopoietic stem cells	blood
23	chr8:131207600-131212200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr8:131207600-131212200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr8:131207600-131212400	Weak transcription	Small Intestine	intestine
26	chr8:131207800-131211800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr8:131207800-131212000	Weak transcription	Primary B cells from cord blood	blood
28	chr8:131207800-131212400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr8:131207800-131218400	Enhancers	Primary neutrophils fromperipheralblood	blood
30	chr8:131208000-131211800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr8:131208000-131213000	Weak transcription	NHDF-Ad	bronchial
32	chr8:131208000-131213200	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr8:131208200-131214800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr8:131208400-131214200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr8:131208400-131215600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr8:131208600-131211800	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr8:131208600-131212000	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr8:131208600-131212200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr8:131209000-131213200	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr8:131209000-131218600	Weak transcription	Fetal Kidney	kidney
41	chr8:131209000-131224200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr8:131209200-131212000	Enhancers	Ovary	ovary
43	chr8:131209200-131212200	Weak transcription	HUVEC	blood vessel
44	chr8:131209200-131216600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr8:131209600-131261200	Weak transcription	Esophagus	oesophagus
46	chr8:131209800-131211800	Enhancers	Fetal Intestine Large	intestine
47	chr8:131209800-131213400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr8:131210000-131212400	Weak transcription	Brain Angular Gyrus	brain
49	chr8:131210000-131215400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr8:131210000-131216400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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