Variant report

Variant	rs10100892
Chromosome Location	chr8:131237021-131237022
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:131230566..131233356-chr8:131236600..131238831,2	MCF-7	breast:
2	chr8:131236220..131238731-chr8:131241044..131243639,2	MCF-7	breast:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10087217	0.91[LWK][hapmap]
rs10089819	0.83[CEU][hapmap];0.93[CHB][hapmap];0.86[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.92[TSI][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10091450	0.83[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.94[TSI][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10103280	0.86[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap]
rs1031474	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1031475	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10956512	0.90[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.81[YRI][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11774633	0.80[ASN][1000 genomes]
rs11774943	0.94[JPT][hapmap]
rs12679149	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13269464	0.81[CHD][hapmap]
rs1426101	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1563165	0.94[JPT][hapmap]
rs16904211	0.84[YRI][hapmap]
rs16904259	0.91[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.81[JPT][hapmap]
rs2554369	0.83[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.95[MEX][hapmap];0.91[TSI][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2554372	0.82[CHB][hapmap];0.83[JPT][hapmap];0.85[TSI][hapmap]
rs2670885	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2670888	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2670890	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.88[YRI][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2670891	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2791338	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2791342	0.91[CEU][hapmap];1.00[CHB][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.91[MEX][hapmap];0.91[TSI][hapmap];0.82[ASN][1000 genomes]
rs2791343	0.83[CEU][hapmap];0.82[ASN][1000 genomes]
rs2791350	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs28495072	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2894508	0.82[CHD][hapmap]
rs2943086	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.85[YRI][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3057	0.92[CHD][hapmap]
rs6415510	0.95[CEU][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6470800	0.84[CHD][hapmap]
rs6470801	0.83[ASW][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.91[TSI][hapmap];0.81[YRI][hapmap];0.91[ASN][1000 genomes]
rs6470802	0.81[CHD][hapmap]
rs6470804	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7002892	0.80[ASN][1000 genomes]
rs7003309	1.00[CHB][hapmap];0.82[CHD][hapmap];0.94[GIH][hapmap];0.95[MEX][hapmap];0.94[TSI][hapmap];0.85[ASN][1000 genomes]
rs7004884	0.87[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7008507	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7460225	0.88[CHD][hapmap]
rs7817803	0.85[CHD][hapmap]
rs7839523	0.88[CHD][hapmap]
rs7846376	0.87[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.91[MEX][hapmap];0.97[TSI][hapmap];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9297805	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869334	chr8:131025093-131651487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv915580	chr8:131025093-131667578	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv465810	chr8:131039109-131331012	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv612234	chr8:131039109-131331012	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv533085	chr8:131042781-131755007	Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
6	nsv831461	chr8:131159819-131302900	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv870148	chr8:131206342-131373989	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:131200600-131246600	Weak transcription	Pancreas	Pancrea
2	chr8:131209600-131261200	Weak transcription	Esophagus	oesophagus
3	chr8:131210000-131250400	Weak transcription	Gastric	stomach
4	chr8:131214000-131255800	Weak transcription	Brain Angular Gyrus	brain
5	chr8:131214400-131257000	Weak transcription	Duodenum Mucosa	Duodenum
6	chr8:131214600-131238200	Weak transcription	Ovary	ovary
7	chr8:131217000-131260600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr8:131217600-131246400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr8:131219000-131255000	Weak transcription	Thymus	Thymus
10	chr8:131219200-131238000	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr8:131219200-131246800	Weak transcription	Fetal Thymus	thymus
12	chr8:131219200-131248000	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr8:131219800-131247800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr8:131220000-131254800	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr8:131220000-131255000	Weak transcription	Brain Hippocampus Middle	brain
16	chr8:131220200-131239400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr8:131220200-131240400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr8:131220200-131240400	Weak transcription	HSMMtube	muscle
19	chr8:131220200-131248000	Weak transcription	Brain Anterior Caudate	brain
20	chr8:131225200-131245400	Weak transcription	Dnd41	blood
21	chr8:131225200-131246200	Weak transcription	Adipose Nuclei	Adipose
22	chr8:131225200-131250200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr8:131225200-131253400	Weak transcription	Right Ventricle	heart
24	chr8:131225800-131274800	Weak transcription	Hela-S3	cervix
25	chr8:131226200-131238800	Weak transcription	NHEK	skin
26	chr8:131226200-131245200	Weak transcription	Fetal Muscle Leg	muscle
27	chr8:131226200-131248000	Weak transcription	Psoas Muscle	Psoas
28	chr8:131226200-131251600	Weak transcription	K562	blood
29	chr8:131226400-131244000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr8:131226400-131246600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr8:131226600-131245200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr8:131226800-131244000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr8:131227000-131238600	Weak transcription	HMEC	breast
34	chr8:131227000-131245600	Weak transcription	Placenta	Placenta
35	chr8:131227000-131246200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr8:131227000-131246400	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr8:131227200-131246600	Weak transcription	HepG2	liver
38	chr8:131227200-131251200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr8:131229400-131238800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr8:131229400-131251600	Weak transcription	Aorta	Aorta
41	chr8:131230600-131240000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr8:131230600-131245400	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr8:131232200-131238800	Weak transcription	Left Ventricle	heart
44	chr8:131232200-131244000	Weak transcription	Primary hematopoietic stem cells	blood
45	chr8:131232200-131246600	Weak transcription	Spleen	Spleen
46	chr8:131232200-131257000	Weak transcription	Lung	lung
47	chr8:131232400-131237800	Weak transcription	Fetal Heart	heart
48	chr8:131232400-131238200	Enhancers	HUVEC	blood vessel
49	chr8:131232400-131239400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr8:131232400-131261200	Weak transcription	Fetal Stomach	stomach

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