Variant report

Variant	rs7846376
Chromosome Location	chr8:131155443-131155444
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:131153447..131156687-chr8:131158655..131161846,3	K562	blood:
2	chr8:131140935..131143868-chr8:131153030..131155718,2	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10089819	0.96[CEU][hapmap];0.93[CHB][hapmap];0.83[CHD][hapmap];0.88[GIH][hapmap];0.94[JPT][hapmap];0.96[MEX][hapmap];0.94[TSI][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10091450	0.83[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.96[MEX][hapmap];0.91[TSI][hapmap];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10100892	0.87[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.91[MEX][hapmap];0.97[TSI][hapmap];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10113410	0.89[CHD][hapmap]
rs1031474	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1031475	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10956512	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1158570	0.82[CHD][hapmap];0.84[MEX][hapmap]
rs11774943	1.00[JPT][hapmap]
rs11774947	0.81[CHD][hapmap]
rs12546206	0.81[CHD][hapmap]
rs12679149	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1340022	0.88[CHD][hapmap]
rs1426101	0.87[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs1563165	0.82[CHD][hapmap];1.00[JPT][hapmap]
rs2045092	0.88[CHD][hapmap]
rs2554369	0.83[ASW][hapmap];0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.88[TSI][hapmap]
rs2554372	0.92[CEU][hapmap];0.82[CHB][hapmap];0.83[MEX][hapmap];0.88[TSI][hapmap]
rs2670885	0.87[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs2670888	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2670890	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2670891	0.82[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs2791338	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2791342	0.83[ASW][hapmap];0.87[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];0.88[TSI][hapmap]
rs2791343	0.96[CEU][hapmap]
rs2791350	0.87[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs28495072	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2943086	0.87[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.94[TSI][hapmap]
rs3057	0.81[LWK][hapmap];0.88[MEX][hapmap];0.82[YRI][hapmap]
rs6415510	0.83[CEU][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6470800	0.81[CHD][hapmap]
rs6470801	0.83[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.94[GIH][hapmap];0.94[JPT][hapmap];0.96[MEX][hapmap];0.94[TSI][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6470804	0.91[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6984963	0.82[YRI][hapmap]
rs7003309	0.89[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.94[GIH][hapmap];0.82[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7004884	0.82[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.97[TSI][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7008180	0.83[YRI][hapmap]
rs7008507	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7386417	0.89[CHD][hapmap]
rs7460225	0.81[LWK][hapmap];0.88[MEX][hapmap];0.89[YRI][hapmap]
rs7460645	0.86[CHD][hapmap]
rs7817803	0.88[MEX][hapmap]
rs7839523	0.83[LWK][hapmap];0.88[MEX][hapmap]
rs9297805	0.94[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.85[YRI][hapmap];0.83[AFR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs966185	0.83[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869334	chr8:131025093-131651487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv915580	chr8:131025093-131667578	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv465810	chr8:131039109-131331012	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv612234	chr8:131039109-131331012	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv533085	chr8:131042781-131755007	Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:131076200-131170600	Weak transcription	Small Intestine	intestine
2	chr8:131116000-131193800	Strong transcription	Primary neutrophils fromperipheralblood	blood
3	chr8:131128800-131186800	Weak transcription	Fetal Brain Male	brain
4	chr8:131130400-131180200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr8:131138800-131164600	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr8:131139000-131156000	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr8:131140000-131156400	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr8:131140000-131169200	Weak transcription	Brain Angular Gyrus	brain
9	chr8:131141400-131164400	Weak transcription	Primary hematopoietic stem cells	blood
10	chr8:131144000-131156400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr8:131146400-131158200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr8:131146600-131178800	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr8:131146600-131206000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr8:131147200-131163800	Weak transcription	Colon Smooth Muscle	Colon
15	chr8:131147400-131194400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr8:131147600-131155800	Weak transcription	Fetal Kidney	kidney
17	chr8:131147600-131159800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr8:131147600-131162000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr8:131147600-131170400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr8:131147600-131199800	Weak transcription	Pancreas	Pancrea
21	chr8:131147800-131156200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr8:131148000-131183800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr8:131148000-131194400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr8:131148400-131169800	Weak transcription	K562	blood
25	chr8:131148600-131164800	Weak transcription	Brain Anterior Caudate	brain
26	chr8:131148600-131169800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr8:131148600-131170200	Weak transcription	Fetal Intestine Small	intestine
28	chr8:131149000-131162000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr8:131149000-131168000	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr8:131149000-131170600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr8:131149000-131178400	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr8:131149200-131156800	Weak transcription	Liver	Liver
33	chr8:131149200-131158600	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr8:131149200-131158600	Weak transcription	Dnd41	blood
35	chr8:131149200-131162200	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr8:131149200-131163600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr8:131149200-131163600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr8:131149200-131163800	Weak transcription	Brain Hippocampus Middle	brain
39	chr8:131149200-131164000	Weak transcription	Brain Substantia Nigra	brain
40	chr8:131149200-131168600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr8:131149200-131172200	Weak transcription	HepG2	liver
42	chr8:131149200-131178600	Weak transcription	Brain Cingulate Gyrus	brain
43	chr8:131149200-131184400	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr8:131149400-131161800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr8:131149400-131163800	Weak transcription	HUES48 Cell Line	embryonic stem cell
46	chr8:131149400-131163800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
47	chr8:131149400-131169200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
48	chr8:131149400-131169600	Weak transcription	Rectal Smooth Muscle	rectum
49	chr8:131149600-131157800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr8:131149600-131158000	Weak transcription	Fetal Lung	lung

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