Variant report

Variant	rs1340022
Chromosome Location	chr8:131334465-131334466
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:131332115..131335468-chr8:131338120..131341741,4	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10089819	0.83[CHD][hapmap]
rs1123205	0.82[CEU][hapmap]
rs1158569	0.83[GIH][hapmap];0.80[JPT][hapmap];0.84[MEX][hapmap];0.84[TSI][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1158570	0.82[CEU][hapmap];0.89[CHB][hapmap];0.88[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11774633	0.83[CHB][hapmap];0.94[JPT][hapmap]
rs11774659	0.88[CHB][hapmap];0.94[JPT][hapmap]
rs11774947	0.87[CHD][hapmap]
rs11775292	0.89[CHD][hapmap]
rs12546206	0.87[CHD][hapmap]
rs13258946	0.87[CHD][hapmap]
rs2185366	0.93[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2554369	0.88[CHD][hapmap]
rs2554372	0.80[MEX][hapmap];0.88[YRI][hapmap]
rs2791342	0.91[CHD][hapmap]
rs3057	0.89[CHB][hapmap];0.83[CHD][hapmap];0.86[GIH][hapmap];0.94[JPT][hapmap];0.85[TSI][hapmap];0.92[ASN][1000 genomes]
rs4733780	0.84[CHD][hapmap]
rs6470811	0.81[EUR][1000 genomes]
rs6470816	0.89[ASW][hapmap];0.80[JPT][hapmap]
rs6984963	0.89[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6985563	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7002892	0.83[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap]
rs7004884	0.88[CHD][hapmap]
rs7008182	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7387699	0.80[AFR][1000 genomes]
rs7460225	0.89[CHB][hapmap];0.85[CHD][hapmap];0.86[GIH][hapmap];0.94[JPT][hapmap];0.87[TSI][hapmap];0.94[ASN][1000 genomes]
rs7817803	0.89[CHB][hapmap];0.83[CHD][hapmap];0.86[GIH][hapmap];0.94[JPT][hapmap];0.87[TSI][hapmap];0.92[ASN][1000 genomes]
rs7832651	0.80[CHD][hapmap]
rs7839523	0.89[CHB][hapmap];0.85[CHD][hapmap];0.83[GIH][hapmap];0.94[JPT][hapmap];0.87[TSI][hapmap]
rs7846376	0.88[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869334	chr8:131025093-131651487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv915580	chr8:131025093-131667578	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv533085	chr8:131042781-131755007	Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv870148	chr8:131206342-131373989	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:131313400-131335000	Weak transcription	Pancreas	Pancrea
2	chr8:131315600-131342000	Weak transcription	Rectal Smooth Muscle	rectum
3	chr8:131315600-131353400	Weak transcription	Dnd41	blood
4	chr8:131322000-131335000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr8:131322000-131338200	Weak transcription	Esophagus	oesophagus
6	chr8:131323400-131345600	Weak transcription	Fetal Intestine Small	intestine
7	chr8:131324800-131344600	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr8:131325200-131335800	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr8:131325200-131336200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr8:131326400-131336200	Weak transcription	Hela-S3	cervix
11	chr8:131326800-131336400	Weak transcription	Fetal Lung	lung
12	chr8:131326800-131347800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr8:131327000-131334800	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr8:131327000-131345600	Weak transcription	Fetal Muscle Trunk	muscle
15	chr8:131327200-131337800	Weak transcription	Fetal Kidney	kidney
16	chr8:131328400-131334800	Weak transcription	Liver	Liver
17	chr8:131329000-131337000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr8:131329200-131335200	Weak transcription	Small Intestine	intestine
19	chr8:131330200-131334800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr8:131330200-131334800	Weak transcription	Stomach Mucosa	stomach
21	chr8:131330200-131335000	Weak transcription	Left Ventricle	heart
22	chr8:131330200-131335200	Weak transcription	Right Ventricle	heart
23	chr8:131330200-131353400	Weak transcription	Aorta	Aorta
24	chr8:131330400-131336200	Weak transcription	Fetal Heart	heart
25	chr8:131330600-131334800	Weak transcription	Brain Cingulate Gyrus	brain
26	chr8:131330600-131335000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr8:131330600-131336400	Weak transcription	HMEC	breast
28	chr8:131330800-131334600	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr8:131330800-131335000	Weak transcription	Right Atrium	heart
30	chr8:131330800-131338400	Weak transcription	Placenta	Placenta
31	chr8:131331000-131334800	Weak transcription	Stomach Smooth Muscle	stomach
32	chr8:131331000-131335000	Weak transcription	Duodenum Mucosa	Duodenum
33	chr8:131331000-131335200	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr8:131331000-131335600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr8:131331000-131342400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr8:131331200-131335800	Weak transcription	Fetal Muscle Leg	muscle
37	chr8:131331200-131340400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
38	chr8:131331400-131334600	Weak transcription	Brain Hippocampus Middle	brain
39	chr8:131331600-131335000	Weak transcription	K562	blood
40	chr8:131331800-131334800	Weak transcription	Brain Substantia Nigra	brain
41	chr8:131331800-131335000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr8:131331800-131335800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr8:131331800-131339600	Weak transcription	Primary hematopoietic stem cells	blood
44	chr8:131331800-131340000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr8:131332000-131334600	Weak transcription	Fetal Thymus	thymus
46	chr8:131332000-131335000	Enhancers	Monocytes-CD14+_RO01746	blood
47	chr8:131332000-131335000	Weak transcription	NHEK	skin
48	chr8:131332000-131335200	Weak transcription	Thymus	Thymus
49	chr8:131332000-131335800	Weak transcription	HUVEC	blood vessel
50	chr8:131332000-131336000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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