Variant report

Variant	rs7832651
Chromosome Location	chr8:131265218-131265219
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:131263978..131265844-chr8:131269482..131272106,2	MCF-7	breast:

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10091313	0.80[CHB][hapmap];0.80[ASN][1000 genomes]
rs10113410	0.86[CHD][hapmap]
rs1017281	0.89[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10956511	1.00[CHB][hapmap];0.85[CHD][hapmap];0.95[JPT][hapmap];0.82[LWK][hapmap];0.82[MEX][hapmap];0.86[MKK][hapmap];0.85[ASN][1000 genomes]
rs10956514	0.89[CEU][hapmap];0.86[CHB][hapmap];0.91[GIH][hapmap];0.82[JPT][hapmap];0.81[MEX][hapmap];0.95[TSI][hapmap];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1118887	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs1123205	0.89[CEU][hapmap];0.95[CHB][hapmap];0.89[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.86[MEX][hapmap];0.95[TSI][hapmap]
rs1158570	0.86[CHD][hapmap]
rs11774690	0.82[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11774947	0.86[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11775292	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12546206	0.82[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.91[TSI][hapmap];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12680942	0.83[ASN][1000 genomes]
rs13258946	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes]
rs13265869	0.82[EUR][1000 genomes]
rs13269464	0.80[CHB][hapmap]
rs1340021	0.96[CEU][hapmap];0.95[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes]
rs1340022	0.80[CHD][hapmap]
rs1469288	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs1538728	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17212137	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17282526	0.80[CHB][hapmap]
rs17284725	0.81[CEU][hapmap];0.85[CHB][hapmap];0.82[JPT][hapmap];0.80[AMR][1000 genomes]
rs1978550	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2033059	0.86[CHB][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs2045092	0.83[CHD][hapmap]
rs2114196	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs2123870	0.80[CHB][hapmap]
rs2554373	0.80[CHB][hapmap];0.89[CHD][hapmap];0.83[MEX][hapmap];0.83[ASN][1000 genomes]
rs2670884	0.84[ASN][1000 genomes]
rs2894508	0.96[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3057	0.80[CHD][hapmap]
rs34656350	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3935174	1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs4733568	0.80[CHB][hapmap]
rs4733571	0.80[ASW][hapmap];0.82[CEU][hapmap];0.86[CHB][hapmap];0.85[GIH][hapmap];0.82[JPT][hapmap];0.86[MEX][hapmap];0.91[TSI][hapmap]
rs4733572	0.86[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4733768	0.82[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.93[TSI][hapmap];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4733770	0.89[ASN][1000 genomes]
rs4733775	0.81[CHB][hapmap];0.81[GIH][hapmap];0.82[JPT][hapmap];0.82[MEX][hapmap];0.87[TSI][hapmap]
rs4733776	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];0.95[TSI][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4733777	0.82[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4733780	0.86[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4733781	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs62524640	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62525919	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62525923	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62525931	0.82[EUR][1000 genomes]
rs6470800	0.80[CHB][hapmap]
rs6470802	0.80[CHB][hapmap]
rs6470805	0.95[CHB][hapmap];0.84[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs6470815	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes]
rs6992305	0.80[CHB][hapmap]
rs7002892	0.92[CHD][hapmap]
rs7012705	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs7015970	0.80[CHB][hapmap]
rs7018225	1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.98[TSI][hapmap];0.85[EUR][1000 genomes]
rs7386417	0.80[CHB][hapmap];0.86[CHD][hapmap]
rs7460645	0.80[CHB][hapmap];0.83[CHD][hapmap]
rs7464885	0.93[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.93[GIH][hapmap];0.90[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.91[TSI][hapmap];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7833007	0.80[CHB][hapmap]
rs7839155	0.82[CEU][hapmap];0.85[GIH][hapmap];0.82[JPT][hapmap];0.82[MEX][hapmap];0.93[TSI][hapmap]
rs876575	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs9643252	0.81[CHB][hapmap]
rs966185	0.80[CHB][hapmap];0.80[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869334	chr8:131025093-131651487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv915580	chr8:131025093-131667578	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv465810	chr8:131039109-131331012	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv612234	chr8:131039109-131331012	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv533085	chr8:131042781-131755007	Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
6	nsv831461	chr8:131159819-131302900	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv870148	chr8:131206342-131373989	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:131225800-131274800	Weak transcription	Hela-S3	cervix
2	chr8:131237400-131268000	Weak transcription	Fetal Lung	lung
3	chr8:131242400-131268200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr8:131250000-131267000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr8:131250800-131266800	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr8:131250800-131270600	Weak transcription	NH-A	brain
7	chr8:131250800-131289200	Weak transcription	Fetal Muscle Trunk	muscle
8	chr8:131252200-131270400	Weak transcription	Aorta	Aorta
9	chr8:131256000-131267000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr8:131256600-131268200	Weak transcription	HSMMtube	muscle
11	chr8:131257400-131270400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr8:131257400-131281600	Weak transcription	Gastric	stomach
13	chr8:131257600-131265400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr8:131258000-131275400	Weak transcription	Stomach Mucosa	stomach
15	chr8:131258400-131267200	Weak transcription	Adipose Nuclei	Adipose
16	chr8:131258600-131267000	Weak transcription	HepG2	liver
17	chr8:131260000-131275200	Weak transcription	Fetal Intestine Small	intestine
18	chr8:131260600-131271600	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr8:131260800-131266000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr8:131260800-131270200	Weak transcription	Right Ventricle	heart
21	chr8:131260800-131272800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr8:131261000-131268000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr8:131261000-131268000	Weak transcription	Psoas Muscle	Psoas
24	chr8:131261200-131274400	Weak transcription	Fetal Muscle Leg	muscle
25	chr8:131261400-131271000	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr8:131261400-131275800	Weak transcription	Primary hematopoietic stem cells	blood
27	chr8:131261600-131266600	Weak transcription	HUVEC	blood vessel
28	chr8:131261600-131267200	Weak transcription	Fetal Stomach	stomach
29	chr8:131261600-131268400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr8:131261600-131270400	Weak transcription	Spleen	Spleen
31	chr8:131261600-131270400	Weak transcription	NHEK	skin
32	chr8:131261600-131275400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr8:131261800-131265800	Enhancers	Primary neutrophils fromperipheralblood	blood
34	chr8:131261800-131276000	Weak transcription	K562	blood
35	chr8:131262000-131271600	Weak transcription	Primary B cells from cord blood	blood
36	chr8:131262200-131267400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr8:131262200-131268200	Weak transcription	Left Ventricle	heart
38	chr8:131262200-131270800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr8:131262200-131276200	Weak transcription	Primary T cells fromperipheralblood	blood
40	chr8:131262400-131270400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr8:131262800-131265400	Weak transcription	Primary T helper cells PMA-I stimulated	--
42	chr8:131262800-131266800	Weak transcription	Brain Substantia Nigra	brain
43	chr8:131262800-131267000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr8:131262800-131267600	Weak transcription	Brain Angular Gyrus	brain
45	chr8:131262800-131267600	Weak transcription	Brain Hippocampus Middle	brain
46	chr8:131262800-131267600	Weak transcription	Ovary	ovary
47	chr8:131262800-131271400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr8:131263000-131267400	Weak transcription	Brain Anterior Caudate	brain
49	chr8:131263000-131275800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
50	chr8:131263000-131276000	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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