Variant report

Variant	rs4733781
Chromosome Location	chr8:131296767-131296768
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:131295881..131297673-chr8:131355533..131357143,2	K562	blood:
2	chr8:131295924..131298030-chr8:131301524..131303913,2	K562	blood:
3	chr8:131293646..131296151-chr8:131296609..131298187,2	MCF-7	breast:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs1017281	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs10956511	0.86[CHB][hapmap];0.86[JPT][hapmap];0.87[TSI][hapmap]
rs10956514	1.00[CHB][hapmap];0.95[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1118887	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1123205	0.92[ASW][hapmap];0.80[CHB][hapmap];0.85[GIH][hapmap];0.86[JPT][hapmap];0.82[YRI][hapmap]
rs1158569	0.81[CHD][hapmap]
rs11774690	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs11774947	0.86[CHB][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs11775292	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs12546206	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs12548888	0.83[ASN][1000 genomes]
rs12549794	0.83[ASN][1000 genomes]
rs12677193	0.81[CHB][hapmap]
rs12680942	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13258946	0.84[ASW][hapmap];0.86[CHB][hapmap];0.81[JPT][hapmap]
rs1340021	0.84[ASW][hapmap];0.80[CHB][hapmap];0.86[JPT][hapmap]
rs1469288	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1538728	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs17212137	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs17284725	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs17285138	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1978550	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs2033059	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2114196	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2305513	0.81[CHB][hapmap];0.90[CHD][hapmap]
rs2554374	0.81[CHB][hapmap];0.80[CHD][hapmap]
rs2894508	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs34656350	0.93[ASN][1000 genomes]
rs3935174	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs4733571	0.82[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4733572	0.86[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs4733768	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs4733775	0.95[CHB][hapmap];0.95[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs4733776	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs4733777	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4733780	0.86[CHB][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs62524650	0.83[ASN][1000 genomes]
rs62525919	0.90[ASN][1000 genomes]
rs62525923	0.80[ASN][1000 genomes]
rs62525931	0.84[ASN][1000 genomes]
rs6470805	0.85[GIH][hapmap];0.86[JPT][hapmap];0.82[TSI][hapmap]
rs6470812	0.80[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs6470815	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs6470816	0.84[CHD][hapmap]
rs6991975	0.81[CHB][hapmap]
rs7012705	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7018225	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs72722365	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7464885	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs7832651	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs7834461	0.81[CHB][hapmap]
rs7837226	0.81[CHB][hapmap]
rs7839155	0.82[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs876575	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9643252	0.95[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869334	chr8:131025093-131651487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv915580	chr8:131025093-131667578	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv465810	chr8:131039109-131331012	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv612234	chr8:131039109-131331012	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv533085	chr8:131042781-131755007	Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
6	nsv831461	chr8:131159819-131302900	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv870148	chr8:131206342-131373989	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:131282000-131298800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:131282400-131314800	Weak transcription	Gastric	stomach
3	chr8:131283800-131299200	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr8:131289000-131299600	Weak transcription	Pancreas	Pancrea
5	chr8:131289400-131297000	Weak transcription	Fetal Lung	lung
6	chr8:131289400-131300000	Weak transcription	Fetal Brain Female	brain
7	chr8:131289400-131303600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr8:131289400-131304200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr8:131289600-131296800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr8:131289600-131296800	Weak transcription	Fetal Muscle Leg	muscle
11	chr8:131289600-131296800	Weak transcription	Fetal Stomach	stomach
12	chr8:131289600-131296800	Weak transcription	Right Atrium	heart
13	chr8:131289600-131296800	Weak transcription	Stomach Smooth Muscle	stomach
14	chr8:131289600-131300200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr8:131289600-131300200	Weak transcription	Fetal Intestine Small	intestine
16	chr8:131290200-131299600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr8:131290200-131302800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr8:131290200-131305400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr8:131290200-131305600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr8:131291600-131297000	Weak transcription	Aorta	Aorta
21	chr8:131291800-131296800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr8:131291800-131296800	Weak transcription	Right Ventricle	heart
23	chr8:131291800-131296800	Weak transcription	Spleen	Spleen
24	chr8:131291800-131300200	Weak transcription	Placenta	Placenta
25	chr8:131291800-131302400	Weak transcription	Left Ventricle	heart
26	chr8:131291800-131305400	Weak transcription	Lung	lung
27	chr8:131292200-131296800	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr8:131292600-131297600	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr8:131292600-131298000	Weak transcription	NHEK	skin
30	chr8:131292600-131301800	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr8:131292600-131303000	Weak transcription	Adipose Nuclei	Adipose
32	chr8:131292800-131296800	Weak transcription	Brain Angular Gyrus	brain
33	chr8:131292800-131296800	Weak transcription	Brain Anterior Caudate	brain
34	chr8:131292800-131296800	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr8:131292800-131296800	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr8:131292800-131297000	Weak transcription	HMEC	breast
37	chr8:131292800-131297800	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr8:131292800-131300200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr8:131292800-131302000	Weak transcription	NH-A	brain
40	chr8:131292800-131304800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr8:131293400-131296800	Weak transcription	Brain Germinal Matrix	brain
42	chr8:131293600-131296800	Weak transcription	Fetal Heart	heart
43	chr8:131293600-131297200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr8:131293600-131300600	Weak transcription	A549	lung
45	chr8:131293800-131299000	Weak transcription	HepG2	liver
46	chr8:131294000-131300000	Weak transcription	HUVEC	blood vessel
47	chr8:131294800-131297000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr8:131295000-131296800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
49	chr8:131295200-131296800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr8:131295200-131297000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links