Variant report

Variant	rs9643252
Chromosome Location	chr8:131332667-131332668
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:131332115..131335468-chr8:131338120..131341741,4	MCF-7	breast:
2	chr8:131330257..131333007-chr8:131345961..131348000,2	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1017281	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs10956514	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs1118887	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs1123205	0.85[CHB][hapmap];0.81[JPT][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11774690	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs11774947	0.81[CHB][hapmap]
rs11775292	0.81[CHB][hapmap]
rs12546206	0.81[CHB][hapmap]
rs12549794	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13258946	0.81[CHB][hapmap];0.82[EUR][1000 genomes]
rs1340021	0.85[CHB][hapmap];0.81[JPT][hapmap];0.83[EUR][1000 genomes]
rs1469288	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs1538728	0.81[CHB][hapmap];0.81[JPT][hapmap];0.83[EUR][1000 genomes]
rs17212137	0.82[CHB][hapmap]
rs17284725	0.84[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.92[EUR][1000 genomes]
rs17285138	0.81[ASN][1000 genomes]
rs1978550	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs2033059	0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs2114196	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs2894508	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs3935174	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs4733571	0.84[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4733572	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs4733768	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs4733775	0.90[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes]
rs4733776	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs4733777	0.85[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4733780	0.81[CHB][hapmap]
rs4733781	0.95[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs62525919	0.84[AMR][1000 genomes]
rs62525923	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62525931	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6470805	0.81[JPT][hapmap]
rs6470812	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6470815	0.82[CHB][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes]
rs7012705	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs7018225	0.81[CHB][hapmap];0.82[EUR][1000 genomes]
rs7464885	0.81[CHB][hapmap]
rs7832651	0.81[CHB][hapmap]
rs7839155	0.84[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs876575	0.95[CHB][hapmap];0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869334	chr8:131025093-131651487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv915580	chr8:131025093-131667578	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv533085	chr8:131042781-131755007	Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv870148	chr8:131206342-131373989	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:131313400-131335000	Weak transcription	Pancreas	Pancrea
2	chr8:131315600-131342000	Weak transcription	Rectal Smooth Muscle	rectum
3	chr8:131315600-131353400	Weak transcription	Dnd41	blood
4	chr8:131319400-131333600	Weak transcription	HepG2	liver
5	chr8:131322000-131335000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr8:131322000-131338200	Weak transcription	Esophagus	oesophagus
7	chr8:131323400-131345600	Weak transcription	Fetal Intestine Small	intestine
8	chr8:131324800-131344600	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr8:131325200-131335800	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr8:131325200-131336200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr8:131326200-131333400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr8:131326400-131333200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr8:131326400-131336200	Weak transcription	Hela-S3	cervix
14	chr8:131326600-131333600	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr8:131326800-131336400	Weak transcription	Fetal Lung	lung
16	chr8:131326800-131347800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr8:131327000-131333400	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr8:131327000-131333400	Weak transcription	Brain Germinal Matrix	brain
19	chr8:131327000-131333800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr8:131327000-131334200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr8:131327000-131334800	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr8:131327000-131345600	Weak transcription	Fetal Muscle Trunk	muscle
23	chr8:131327200-131337800	Weak transcription	Fetal Kidney	kidney
24	chr8:131328200-131332800	Enhancers	Spleen	Spleen
25	chr8:131328400-131334800	Weak transcription	Liver	Liver
26	chr8:131329000-131337000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr8:131329200-131335200	Weak transcription	Small Intestine	intestine
28	chr8:131329800-131333800	Enhancers	Psoas Muscle	Psoas
29	chr8:131330200-131334800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr8:131330200-131334800	Weak transcription	Stomach Mucosa	stomach
31	chr8:131330200-131335000	Weak transcription	Left Ventricle	heart
32	chr8:131330200-131335200	Weak transcription	Right Ventricle	heart
33	chr8:131330200-131353400	Weak transcription	Aorta	Aorta
34	chr8:131330400-131332800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr8:131330400-131333400	Weak transcription	HSMM	muscle
36	chr8:131330400-131336200	Weak transcription	Fetal Heart	heart
37	chr8:131330600-131334800	Weak transcription	Brain Cingulate Gyrus	brain
38	chr8:131330600-131335000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr8:131330600-131336400	Weak transcription	HMEC	breast
40	chr8:131330800-131333000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr8:131330800-131333000	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr8:131330800-131333400	Weak transcription	HSMMtube	muscle
43	chr8:131330800-131334600	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr8:131330800-131335000	Weak transcription	Right Atrium	heart
45	chr8:131330800-131338400	Weak transcription	Placenta	Placenta
46	chr8:131331000-131333200	Weak transcription	Brain Anterior Caudate	brain
47	chr8:131331000-131333400	Weak transcription	Colon Smooth Muscle	Colon
48	chr8:131331000-131334200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr8:131331000-131334800	Weak transcription	Stomach Smooth Muscle	stomach
50	chr8:131331000-131335000	Weak transcription	Duodenum Mucosa	Duodenum

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