Variant report

Variant	rs7839155
Chromosome Location	chr8:131318869-131318870
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:131313445..131319102-chr8:131321325..131324984,6	MCF-7	breast:
2	chr8:131310179..131312466-chr8:131317225..131319593,2	K562	blood:
3	chr8:131318340..131321278-chr8:131336360..131338722,2	MCF-7	breast:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1017281	0.92[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs10956511	0.86[JPT][hapmap]
rs10956514	0.85[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.98[TSI][hapmap]
rs1118887	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs1123205	0.92[CEU][hapmap];0.81[CHB][hapmap];0.91[GIH][hapmap];0.86[JPT][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1158569	0.81[CHD][hapmap]
rs11774690	0.84[CEU][hapmap];0.86[JPT][hapmap]
rs11774947	0.85[CEU][hapmap];0.85[GIH][hapmap];0.82[JPT][hapmap];0.82[MEX][hapmap];0.93[TSI][hapmap]
rs11775292	0.82[CEU][hapmap];0.85[GIH][hapmap];0.82[JPT][hapmap];0.86[MEX][hapmap];0.93[TSI][hapmap]
rs12546206	0.84[CEU][hapmap];0.80[GIH][hapmap];0.82[JPT][hapmap];0.89[TSI][hapmap]
rs12549794	0.80[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs13258946	0.85[CEU][hapmap];0.85[GIH][hapmap];0.81[JPT][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap]
rs1340021	0.85[CEU][hapmap];0.81[CHB][hapmap];0.85[GIH][hapmap];0.86[JPT][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.81[EUR][1000 genomes]
rs1469288	0.82[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs1538728	0.85[CEU][hapmap];0.85[GIH][hapmap];0.86[JPT][hapmap];0.82[MEX][hapmap];0.93[TSI][hapmap];0.82[EUR][1000 genomes]
rs17212137	0.82[CEU][hapmap];0.82[JPT][hapmap]
rs17284725	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17285138	0.88[ASN][1000 genomes]
rs1978550	0.82[CEU][hapmap];0.85[GIH][hapmap];0.86[JPT][hapmap];0.82[MEX][hapmap];0.93[TSI][hapmap]
rs2033059	1.00[ASW][hapmap];0.82[CEU][hapmap];0.91[CHB][hapmap];0.90[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.87[MKK][hapmap];0.81[ASN][1000 genomes]
rs2114196	0.82[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs2305513	0.90[CHD][hapmap]
rs2554372	0.82[CHD][hapmap]
rs2554374	0.81[CHD][hapmap];0.82[MEX][hapmap]
rs2894508	0.85[CEU][hapmap];0.85[GIH][hapmap];0.86[JPT][hapmap];0.82[MEX][hapmap];0.93[TSI][hapmap]
rs3935174	0.86[JPT][hapmap]
rs4733571	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4733572	0.85[CEU][hapmap];0.85[GIH][hapmap];0.86[JPT][hapmap];0.82[MEX][hapmap];0.93[TSI][hapmap]
rs4733768	0.84[CEU][hapmap];0.80[GIH][hapmap];0.86[JPT][hapmap];0.82[MEX][hapmap];0.91[TSI][hapmap]
rs4733775	1.00[ASW][hapmap];0.92[CEU][hapmap];0.85[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.82[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs4733776	0.82[CEU][hapmap];0.85[GIH][hapmap];0.86[JPT][hapmap];0.82[MEX][hapmap];0.89[TSI][hapmap]
rs4733777	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4733780	0.85[CEU][hapmap];0.85[GIH][hapmap];0.82[JPT][hapmap];0.82[MEX][hapmap];0.93[TSI][hapmap]
rs4733781	0.82[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs62525919	0.83[AMR][1000 genomes]
rs62525923	0.87[EUR][1000 genomes]
rs62525931	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6470805	0.86[JPT][hapmap]
rs6470812	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6470815	0.85[CEU][hapmap];0.86[JPT][hapmap];0.82[EUR][1000 genomes]
rs6470816	0.84[CHD][hapmap]
rs7012705	0.92[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs7018225	0.82[CEU][hapmap];0.85[GIH][hapmap];0.82[JPT][hapmap];0.91[TSI][hapmap];0.81[EUR][1000 genomes]
rs7464885	0.88[CEU][hapmap];0.81[JPT][hapmap];0.82[MEX][hapmap];0.89[TSI][hapmap]
rs7832651	0.82[CEU][hapmap];0.85[GIH][hapmap];0.82[JPT][hapmap];0.82[MEX][hapmap];0.93[TSI][hapmap]
rs876575	0.82[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs9643252	0.84[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869334	chr8:131025093-131651487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv915580	chr8:131025093-131667578	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv465810	chr8:131039109-131331012	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv612234	chr8:131039109-131331012	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv533085	chr8:131042781-131755007	Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
6	nsv870148	chr8:131206342-131373989	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:131306000-131321200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr8:131306000-131321600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr8:131307000-131329600	Weak transcription	Aorta	Aorta
4	chr8:131310800-131328200	Weak transcription	Lung	lung
5	chr8:131311600-131319200	Enhancers	NHDF-Ad	bronchial
6	chr8:131311600-131321600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr8:131312600-131320000	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr8:131313200-131320200	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr8:131313200-131321200	Weak transcription	GM12878-XiMat	blood
10	chr8:131313400-131319600	Weak transcription	Primary B cells from peripheral blood	blood
11	chr8:131313400-131335000	Weak transcription	Pancreas	Pancrea
12	chr8:131315000-131321000	Weak transcription	Spleen	Spleen
13	chr8:131315400-131320000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr8:131315400-131321600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr8:131315400-131321600	Weak transcription	Gastric	stomach
16	chr8:131315400-131321600	Weak transcription	Right Atrium	heart
17	chr8:131315400-131323000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr8:131315400-131323000	Weak transcription	Brain Angular Gyrus	brain
19	chr8:131315400-131323000	Weak transcription	Brain Cingulate Gyrus	brain
20	chr8:131315400-131323000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr8:131315400-131324200	Weak transcription	Fetal Lung	lung
22	chr8:131315400-131324400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr8:131315400-131325000	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr8:131315400-131326000	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr8:131315400-131326000	Weak transcription	Placenta	Placenta
26	chr8:131315600-131319200	Weak transcription	Colon Smooth Muscle	Colon
27	chr8:131315600-131319600	Weak transcription	Primary hematopoietic stem cells	blood
28	chr8:131315600-131319600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr8:131315600-131319600	Weak transcription	Small Intestine	intestine
30	chr8:131315600-131319800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr8:131315600-131319800	Weak transcription	Adipose Nuclei	Adipose
32	chr8:131315600-131321200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr8:131315600-131321600	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr8:131315600-131321800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr8:131315600-131322800	Weak transcription	NH-A	brain
36	chr8:131315600-131323000	Weak transcription	Brain Anterior Caudate	brain
37	chr8:131315600-131326000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
38	chr8:131315600-131331600	Weak transcription	Thymus	Thymus
39	chr8:131315600-131342000	Weak transcription	Rectal Smooth Muscle	rectum
40	chr8:131315600-131353400	Weak transcription	Dnd41	blood
41	chr8:131315800-131321400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr8:131315800-131322800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr8:131316000-131325600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr8:131316200-131319600	Weak transcription	Primary T cells from cord blood	blood
45	chr8:131316200-131319800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr8:131316400-131319000	Enhancers	Primary neutrophils fromperipheralblood	blood
47	chr8:131316400-131320000	Enhancers	HUES6 Cell Line	embryonic stem cell
48	chr8:131316600-131319800	Enhancers	HUES48 Cell Line	embryonic stem cell
49	chr8:131316800-131319400	Enhancers	Skeletal Muscle Female	skeletal muscle
50	chr8:131316800-131320000	Enhancers	iPS-18 Cell Line	embryonic stem cell

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