Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF274	chr9:99959844-99960205	K562	blood:	n/a	n/a
2	ZNF274	chr9:99959874-99960204	NT2-D1	testis:	n/a	n/a
3	POLR2A	chr9:99959892-99960120	HepG2	liver:	n/a	n/a
4	POLR2A	chr9:99959070-99962561	H1-hESC	embryonic stem cell:	n/a	n/a
5	POLR2A	chr9:99959909-99960103	H1-hESC	embryonic stem cell:	n/a	n/a
6	ZNF274	chr9:99959866-99960224	H1-hESC	embryonic stem cell:	n/a	n/a
7	POLR2A	chr9:99959739-99961570	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
ENSG00000242375	TF binding region
RNU6-798P	TF binding region

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10521028	0.92[EUR][1000 genomes]
rs10980890	0.87[EUR][1000 genomes]
rs10980955	0.92[EUR][1000 genomes]
rs10980992	0.88[EUR][1000 genomes]
rs10981005	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10981158	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10981161	0.88[EUR][1000 genomes]
rs12377244	0.88[EUR][1000 genomes]
rs12378555	0.92[EUR][1000 genomes]
rs12550862	0.89[EUR][1000 genomes]
rs13287095	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1857085	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1986462	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34592472	0.92[EUR][1000 genomes]
rs34868501	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35241252	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35285539	0.91[EUR][1000 genomes]
rs4014782	0.86[EUR][1000 genomes]
rs4128763	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4743061	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4743062	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56860287	0.92[EUR][1000 genomes]
rs58003970	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7018753	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7021506	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7848439	0.88[EUR][1000 genomes]
rs7851025	0.92[EUR][1000 genomes]
rs7860303	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7865758	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931946	chr9:99895658-100005099	Bivalent/Poised TSS Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv893607	chr9:99906545-99996548	Enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv893608	chr9:99906545-100005128	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv982327	chr9:99958095-99962059	Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:99942800-99962600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:99949200-99962400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr9:99956800-99961400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr9:99957400-99961200	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr9:99957400-99961400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr9:99957400-99961800	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr9:99957400-99962600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr9:99957600-99961800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr9:99957600-99962000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr9:99957800-99961800	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr9:99960000-99961800	Weak transcription	HUES64 Cell Line	embryonic stem cell

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