Variant report

Variant	rs16905715
Chromosome Location	chr9:101881264-101881265
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:101843671..101845732-chr9:101879282..101882131,2	K562	blood:
2	chr9:101866089..101868012-chr9:101879699..101883328,3	MCF-7	breast:
3	chr9:101878794..101881758-chr9:101887608..101891012,3	K562	blood:

Variant related genes	Relation type
ENSG00000106799	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10988712	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10988724	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10988731	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11466457	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16918338	1.00[AMR][1000 genomes]
rs9282874	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893618	chr9:101800106-101886071	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv893619	chr9:101835165-101936231	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv831666	chr9:101874985-102018690	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101868400-101881400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:101868400-101896400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr9:101868600-101889800	Weak transcription	Ovary	ovary
4	chr9:101868600-101894400	Weak transcription	Fetal Muscle Trunk	muscle
5	chr9:101869200-101881600	Weak transcription	Fetal Intestine Small	intestine
6	chr9:101869200-101884800	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr9:101869800-101884800	Weak transcription	A549	lung
8	chr9:101870000-101908600	Weak transcription	Brain Germinal Matrix	brain
9	chr9:101870400-101881400	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr9:101870600-101889800	Weak transcription	NHLF	lung
11	chr9:101872600-101887800	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr9:101874600-101881600	Weak transcription	Right Atrium	heart
13	chr9:101874600-101889800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr9:101875600-101894600	Weak transcription	Spleen	Spleen
15	chr9:101875800-101881400	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr9:101876400-101889400	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr9:101876600-101904200	Weak transcription	Liver	Liver
18	chr9:101877000-101884000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr9:101877000-101888200	Weak transcription	Osteobl	bone
20	chr9:101877000-101889400	Weak transcription	HSMMtube	muscle
21	chr9:101877200-101884400	Weak transcription	Aorta	Aorta
22	chr9:101877400-101881400	Weak transcription	Small Intestine	intestine
23	chr9:101877400-101887800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr9:101877400-101888200	Weak transcription	Right Ventricle	heart
25	chr9:101877600-101883800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr9:101877800-101882000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr9:101877800-101882000	Weak transcription	Adipose Nuclei	Adipose
28	chr9:101877800-101882600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr9:101878000-101883800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr9:101878000-101897400	Weak transcription	Brain Cingulate Gyrus	brain
31	chr9:101878400-101881400	Weak transcription	Rectal Smooth Muscle	rectum
32	chr9:101878800-101881400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr9:101878800-101881400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr9:101878800-101881400	Weak transcription	Brain Substantia Nigra	brain
35	chr9:101878800-101882000	Weak transcription	Fetal Heart	heart
36	chr9:101878800-101891800	Weak transcription	Fetal Stomach	stomach
37	chr9:101878800-101892400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr9:101878800-101903200	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr9:101879000-101881400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr9:101879000-101883600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr9:101879000-101883800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr9:101879000-101884000	Weak transcription	HUES64 Cell Line	embryonic stem cell
43	chr9:101879000-101887400	Weak transcription	Fetal Brain Female	brain
44	chr9:101879200-101881400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr9:101879400-101883400	Weak transcription	HMEC	breast
46	chr9:101879400-101884000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
47	chr9:101879600-101881400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
48	chr9:101879800-101884000	Weak transcription	Colon Smooth Muscle	Colon
49	chr9:101879800-101888400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr9:101880000-101881600	Weak transcription	Skeletal Muscle Male	skeletal muscle

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