Variant report

Variant	rs16918338
Chromosome Location	chr9:101929812-101929813
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:101921262..101923800-chr9:101929228..101931291,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10988712	1.00[AMR][1000 genomes]
rs10988724	1.00[AMR][1000 genomes]
rs10988731	1.00[AMR][1000 genomes]
rs11466457	1.00[AMR][1000 genomes]
rs16905715	1.00[AMR][1000 genomes]
rs9282874	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893619	chr9:101835165-101936231	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv831666	chr9:101874985-102018690	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101912600-101932200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr9:101922400-101930000	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr9:101922600-101930600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr9:101922800-101930000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr9:101922800-101932200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr9:101925400-101930000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr9:101926400-101930800	Enhancers	GM12878-XiMat	blood
8	chr9:101927800-101930800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr9:101928000-101930400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr9:101928400-101930800	Enhancers	Primary T cells from cord blood	blood
11	chr9:101928800-101930800	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr9:101929400-101930000	Enhancers	K562	blood
13	chr9:101929400-101930800	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr9:101929400-101930800	Enhancers	Thymus	Thymus
15	chr9:101929400-101931000	Enhancers	Primary B cells from peripheral blood	blood
16	chr9:101929600-101930000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr9:101929600-101930400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr9:101929600-101930600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
19	chr9:101929600-101930800	Enhancers	Primary hematopoietic stem cells	blood
20	chr9:101929600-101930800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr9:101929600-101931000	Enhancers	Fetal Thymus	thymus
22	chr9:101929600-101932200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr9:101929800-101930000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
24	chr9:101929800-101930600	Enhancers	Primary neutrophils fromperipheralblood	blood
25	chr9:101929800-101930600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
26	chr9:101929800-101930600	Enhancers	Primary T helper cells PMA-I stimulated	--
27	chr9:101929800-101930800	Enhancers	Primary T helper naive cells from peripheral blood	blood
28	chr9:101929800-101930800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr9:101929800-101930800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
30	chr9:101929800-101933600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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