Variant report

Variant	rs16906250
Chromosome Location	chr11:8885770-8885771
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:8885722..8888540-chr11:9189607..9191630,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11042134	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs16906160	1.00[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16938634	1.00[AMR][1000 genomes]
rs2003885	1.00[AMR][1000 genomes]
rs2568038	0.91[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2742524	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7124619	0.92[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7126651	1.00[AMR][1000 genomes]
rs74052371	1.00[AMR][1000 genomes]
rs7952562	1.00[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758256	chr11:8784813-9009573	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	esv2759803	chr11:8784813-9009573	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv435923	chr11:8839325-9000602	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv832062	chr11:8849295-9009472	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8862400-8888400	Weak transcription	Right Atrium	heart
2	chr11:8863200-8890400	Weak transcription	Fetal Muscle Trunk	muscle
3	chr11:8864000-8888000	Weak transcription	Fetal Intestine Small	intestine
4	chr11:8865800-8886000	Weak transcription	Fetal Stomach	stomach
5	chr11:8877400-8888600	Weak transcription	Fetal Muscle Leg	muscle
6	chr11:8877400-8888600	Weak transcription	Stomach Smooth Muscle	stomach
7	chr11:8878200-8891800	Weak transcription	Psoas Muscle	Psoas
8	chr11:8880200-8892000	Weak transcription	Gastric	stomach
9	chr11:8880400-8885800	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr11:8880400-8888000	Weak transcription	Stomach Mucosa	stomach
11	chr11:8880400-8888200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr11:8880400-8889200	Weak transcription	Lung	lung
13	chr11:8881400-8888200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr11:8884200-8887200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr11:8884200-8887200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr11:8884200-8887800	Enhancers	Hela-S3	cervix
17	chr11:8884200-8889600	Enhancers	NHDF-Ad	bronchial
18	chr11:8884400-8885800	Enhancers	H1 Cell Line	embryonic stem cell
19	chr11:8884400-8885800	Enhancers	H9 Cell Line	embryonic stem cell
20	chr11:8884400-8885800	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr11:8884400-8886200	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr11:8884400-8889000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr11:8884400-8891800	Weak transcription	Left Ventricle	heart
24	chr11:8884600-8885800	Weak transcription	Spleen	Spleen
25	chr11:8884800-8885800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr11:8884800-8885800	Enhancers	HUES64 Cell Line	embryonic stem cell
27	chr11:8885000-8885800	Enhancers	iPS-18 Cell Line	embryonic stem cell
28	chr11:8885000-8886000	Enhancers	iPS-20b Cell Line	embryonic stem cell
29	chr11:8885000-8886000	Enhancers	Esophagus	oesophagus
30	chr11:8885000-8886000	Enhancers	Placenta Amnion	Placenta Amnion
31	chr11:8885000-8886200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr11:8885000-8886200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr11:8885000-8886200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr11:8885000-8886200	Enhancers	Muscle Satellite Cultured Cells	--
35	chr11:8885000-8886200	Enhancers	Placenta	Placenta
36	chr11:8885000-8886400	Enhancers	Osteobl	bone
37	chr11:8885000-8886600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
38	chr11:8885000-8887200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr11:8885000-8888200	Enhancers	NHLF	lung
40	chr11:8885200-8885800	Enhancers	Fetal Lung	lung
41	chr11:8885200-8886000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr11:8885200-8886000	Enhancers	HSMM	muscle
43	chr11:8885200-8886000	Enhancers	HSMMtube	muscle
44	chr11:8885200-8886200	Enhancers	NH-A	brain
45	chr11:8885200-8887400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr11:8885200-8889000	Enhancers	HUVEC	blood vessel
47	chr11:8885400-8885800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr11:8885400-8885800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr11:8885400-8885800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr11:8885400-8885800	Enhancers	Duodenum Smooth Muscle	Duodenum

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