Variant report

Variant	rs16938634
Chromosome Location	chr11:8751180-8751181
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr11:8751120-8751270	GM12865	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:8711146..8713516-chr11:8750024..8752030,2	K562	blood:
2	chr11:8700027..8703082-chr11:8748797..8752038,3	MCF-7	breast:
3	chr11:8704389..8706036-chr11:8750148..8752543,2	K562	blood:
4	chr11:8750659..8752161-chr11:8770797..8772981,2	MCF-7	breast:
5	chr11:8745341..8747316-chr11:8750121..8752572,2	MCF-7	breast:

Variant related genes	Relation type
ST5	TF binding region
ENSG00000166441	Chromatin interaction
ENSG00000254900	Chromatin interaction
ENSG00000200983	Chromatin interaction

rs_ID	r²[population]
rs11042134	1.00[AMR][1000 genomes]
rs16906160	1.00[AMR][1000 genomes]
rs16906250	1.00[AMR][1000 genomes]
rs2568038	1.00[AMR][1000 genomes]
rs2742524	1.00[AMR][1000 genomes]
rs7126651	1.00[AMR][1000 genomes]
rs7952562	1.00[AMR][1000 genomes]

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8735400-8753400	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr11:8736200-8773800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr11:8742600-8754000	Weak transcription	Hela-S3	cervix
4	chr11:8744000-8752800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr11:8744000-8754200	Weak transcription	A549	lung
6	chr11:8744200-8757600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr11:8744800-8751200	Weak transcription	Colonic Mucosa	Colon
8	chr11:8744800-8753000	Weak transcription	Adipose Nuclei	Adipose
9	chr11:8744800-8753400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr11:8745000-8754400	Weak transcription	Small Intestine	intestine
11	chr11:8745600-8751600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr11:8745600-8754000	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr11:8746000-8754200	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr11:8746200-8757400	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr11:8746400-8757200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr11:8746600-8757200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr11:8746600-8783000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr11:8747800-8751800	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr11:8747800-8756400	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr11:8748000-8751600	Genic enhancers	Fetal Stomach	stomach
21	chr11:8748000-8751800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr11:8748000-8752000	Enhancers	Rectal Smooth Muscle	rectum
23	chr11:8748600-8751400	Enhancers	Ovary	ovary
24	chr11:8748800-8751400	Enhancers	Cortex derived primary cultured neurospheres	brain
25	chr11:8748800-8753000	Weak transcription	Aorta	Aorta
26	chr11:8748800-8754600	Weak transcription	Fetal Thymus	thymus
27	chr11:8749000-8751200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr11:8749000-8751200	Weak transcription	Lung	lung
29	chr11:8749000-8754200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr11:8749200-8751200	Weak transcription	Gastric	stomach
31	chr11:8749400-8751400	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr11:8749400-8751400	Weak transcription	Right Atrium	heart
33	chr11:8749400-8751600	Genic enhancers	Fetal Lung	lung
34	chr11:8749400-8753400	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr11:8749400-8753600	Weak transcription	HUVEC	blood vessel
36	chr11:8749400-8754400	Weak transcription	Duodenum Mucosa	Duodenum
37	chr11:8749400-8754600	Weak transcription	Fetal Kidney	kidney
38	chr11:8749800-8751200	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr11:8749800-8751200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr11:8749800-8751200	Enhancers	Placenta Amnion	Placenta Amnion
41	chr11:8750000-8751400	Enhancers	Right Ventricle	heart
42	chr11:8750000-8751600	Enhancers	Brain Inferior Temporal Lobe	brain
43	chr11:8750000-8752800	Strong transcription	Placenta	Placenta
44	chr11:8750000-8753200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr11:8750200-8751200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr11:8750200-8751200	Enhancers	Brain Angular Gyrus	brain
47	chr11:8750200-8751200	Enhancers	Fetal Brain Female	brain
48	chr11:8750200-8751600	Enhancers	Brain Anterior Caudate	brain
49	chr11:8750200-8752200	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
50	chr11:8750200-8752600	Genic enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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