Variant report

Variant	rs16906434
Chromosome Location	chr10:56472264-56472265
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:53779538..53781883-chr10:56470843..56472932,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11004433	1.00[CEU][hapmap];0.80[CHB][hapmap]
rs11004434	0.89[CEU][hapmap];0.94[TSI][hapmap]
rs12413003	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12413015	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.87[TSI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12764105	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap]
rs1336198	1.00[YRI][hapmap]
rs1336199	1.00[ASW][hapmap];0.96[LWK][hapmap];0.87[MKK][hapmap];1.00[YRI][hapmap]
rs16906408	0.82[ASW][hapmap];0.81[MKK][hapmap]
rs16906424	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2384529	1.00[ASW][hapmap];0.92[LWK][hapmap];0.84[MKK][hapmap];0.91[YRI][hapmap];0.87[AFR][1000 genomes]
rs4545447	0.90[YRI][hapmap];0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:29 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050405	chr10:56224676-56800009	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv540635	chr10:56224676-56800009	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv933410	chr10:56319433-56713977	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1043144	chr10:56332903-56680265	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
5	nsv550970	chr10:56361499-56764751	Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
6	esv2758221	chr10:56408027-56566137	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	esv2759754	chr10:56408027-56566137	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv895447	chr10:56428277-56587755	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv2757387	chr10:56436508-56473754	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv1809742	chr10:56441343-56474113	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv1829325	chr10:56442061-56514009	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv1818753	chr10:56445570-56472693	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv1811548	chr10:56446810-56472693	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv2829926	chr10:56448886-56474910	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv1835020	chr10:56448886-56478284	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv550975	chr10:56448886-56494301	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
17	esv1838385	chr10:56452937-56472860	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv1043472	chr10:56452937-56479771	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
19	nsv895448	chr10:56456576-56526747	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
20	nsv1039277	chr10:56456775-56485231	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
21	nsv550980	chr10:56461036-56473373	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
22	nsv550981	chr10:56461036-56474910	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
23	esv1838177	chr10:56462471-56478751	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
24	esv1831037	chr10:56462471-56494301	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
25	nsv526545	chr10:56462471-56554972	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
26	esv1825751	chr10:56467657-56494207	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
27	esv1832833	chr10:56467874-56494301	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
28	esv1826456	chr10:56468563-56493670	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
29	esv14427	chr10:56469623-56503557	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:56472200-56472400	Enhancers	Fetal Lung	lung

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