Variant report

Variant	rs16907254
Chromosome Location	chr11:4931083-4931084
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10500628	0.85[JPT][hapmap]
rs10500629	0.83[JPT][hapmap]
rs10742412	0.83[JPT][hapmap]
rs10768355	0.82[JPT][hapmap]
rs10836934	0.82[JPT][hapmap]
rs10836935	0.83[JPT][hapmap]
rs10836936	0.85[JPT][hapmap]
rs12420732	1.00[YRI][hapmap]
rs1368831	0.82[JPT][hapmap]
rs16907084	0.92[CEU][hapmap];0.92[GIH][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap]
rs2196122	0.86[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap]
rs2570574	0.80[CHB][hapmap]
rs2570586	0.81[CHB][hapmap]
rs7109669	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054847	chr11:4642875-5200656	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
2	esv2758254	chr11:4907893-5135331	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
3	esv2759799	chr11:4907893-5135331	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
4	nsv896917	chr11:4917089-4935470	Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:4930800-4931400	Enhancers	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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