Variant report

Variant	rs10836936
Chromosome Location	chr11:4932436-4932437
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	11:4930618-4934702..11:4934702-4937867	H1-hESC	embryonic stem cell:	embryo
2	11:4930618-4934702..11:5714465-5718134	H1-hESC	embryonic stem cell:	embryo
3	11:4789513-4794705..11:4930618-4934702	H1-hESC	embryonic stem cell:	embryo

Variant related genes	Relation type
ENSG00000132274	Chromatin interaction
ENSG00000176893	Chromatin interaction
ENSG00000188069	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10500627	0.85[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10500628	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10500629	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs10500630	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs10742412	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs10768355	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs10836914	0.86[CHB][hapmap]
rs10836927	0.86[CHB][hapmap]
rs10836931	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap]
rs10836932	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs10836934	0.85[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10836935	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11034546	0.86[CHB][hapmap]
rs11034554	0.82[CHB][hapmap]
rs11034573	0.85[CEU][hapmap];0.80[CHB][hapmap]
rs11034590	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs11034596	0.85[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11034602	0.85[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11034603	0.90[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs12576085	0.80[CHB][hapmap]
rs12577475	0.86[CHB][hapmap]
rs1368831	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16907254	0.85[JPT][hapmap]
rs4910692	0.81[CHB][hapmap]
rs7109669	0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054847	chr11:4642875-5200656	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
2	esv2758254	chr11:4907893-5135331	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
3	esv2759799	chr11:4907893-5135331	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
4	nsv896917	chr11:4917089-4935470	Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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