Variant report

Variant	rs4910692
Chromosome Location	chr11:4912747-4912748
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10500628	0.86[CHB][hapmap]
rs10836912	0.83[GIH][hapmap]
rs10836914	0.95[CHB][hapmap];0.80[CHD][hapmap];0.90[JPT][hapmap]
rs10836927	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs10836931	0.83[CHB][hapmap]
rs10836935	0.83[CHB][hapmap]
rs10836936	0.81[CHB][hapmap]
rs11034493	0.83[GIH][hapmap]
rs11034546	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs11034554	0.91[CHB][hapmap];0.90[JPT][hapmap]
rs11034573	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs11034574	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs12576085	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs12577475	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs1368831	0.83[CHB][hapmap]
rs16907084	0.88[CHD][hapmap];0.85[JPT][hapmap]
rs2570574	0.93[CHD][hapmap];0.90[JPT][hapmap]
rs2570586	0.90[JPT][hapmap]
rs2570591	0.83[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048224	chr11:4390227-4920324	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
2	nsv540917	chr11:4390227-4920324	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
3	nsv1054847	chr11:4642875-5200656	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
4	nsv467666	chr11:4815348-4917089	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv553184	chr11:4815348-4917089	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	esv2758254	chr11:4907893-5135331	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
7	esv2759799	chr11:4907893-5135331	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs4910692	ST5	cis	parietal	SCAN
rs4910692	ART1	cis	parietal	SCAN
rs4910692	OR56A3	cis	parietal	SCAN
rs4910692	OR51B2	cis	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:4911000-4913800	Enhancers	K562	blood
2	chr11:4912400-4914000	Enhancers	Muscle Satellite Cultured Cells	--
3	chr11:4912600-4913800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr11:4912600-4913800	Enhancers	NH-A	brain
5	chr11:4912600-4913800	Enhancers	NHEK	skin
6	chr11:4912600-4913800	Enhancers	Osteobl	bone

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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