Variant report

Variant	rs11034554
Chromosome Location	chr11:4914573-4914574
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:4912456..4914892-chr11:4916437..4919051,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10500627	0.80[CHB][hapmap]
rs10500628	0.82[CHB][hapmap]
rs10500629	0.89[CEU][hapmap];0.82[CHB][hapmap]
rs10500630	0.89[CEU][hapmap];0.83[CHB][hapmap]
rs10742412	0.89[CEU][hapmap];0.87[CHB][hapmap]
rs10768355	0.89[CEU][hapmap];0.87[CHB][hapmap]
rs10836914	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10836927	0.96[CHB][hapmap];1.00[JPT][hapmap]
rs10836931	0.84[CHB][hapmap]
rs10836932	0.89[CEU][hapmap];0.87[CHB][hapmap]
rs10836935	0.83[CHB][hapmap]
rs10836936	0.82[CHB][hapmap]
rs11034546	0.96[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11034573	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs11034574	0.83[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs11034590	0.87[CEU][hapmap];0.87[CHB][hapmap]
rs11034603	0.83[CEU][hapmap];0.83[CHB][hapmap]
rs12576085	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs12577475	0.96[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1368831	0.84[CHB][hapmap]
rs16906999	0.84[CEU][hapmap]
rs2570574	0.81[JPT][hapmap]
rs2570586	0.82[JPT][hapmap]
rs4910692	0.91[CHB][hapmap];0.90[JPT][hapmap]
rs7109669	0.89[CEU][hapmap];0.86[CHB][hapmap];0.81[EUR][1000 genomes]
rs7932754	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048224	chr11:4390227-4920324	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
2	nsv540917	chr11:4390227-4920324	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
3	nsv1054847	chr11:4642875-5200656	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
4	nsv467666	chr11:4815348-4917089	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv553184	chr11:4815348-4917089	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	esv2758254	chr11:4907893-5135331	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
7	esv2759799	chr11:4907893-5135331	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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