Variant report

Variant	rs11034574
Chromosome Location	chr11:4920335-4920336
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:4918642..4921294-chr11:5101983..5104188,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10500627	0.83[CHB][hapmap]
rs10500628	0.83[CHD][hapmap]
rs10500629	0.94[CEU][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];0.94[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap]
rs10500630	0.81[ASW][hapmap];0.94[CEU][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];0.89[LWK][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap]
rs10742412	0.94[CEU][hapmap];0.82[CHB][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap]
rs10768355	0.81[ASW][hapmap];0.94[CEU][hapmap];0.82[CHB][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];0.89[LWK][hapmap];0.94[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap]
rs10836914	0.91[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs10836927	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs10836932	0.94[CEU][hapmap];0.82[CHB][hapmap];0.81[CHD][hapmap];1.00[GIH][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap]
rs10836934	0.83[CHB][hapmap]
rs11034546	0.91[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs11034554	0.83[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs11034573	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs11034590	0.92[CEU][hapmap];0.81[CHB][hapmap]
rs11034596	0.83[CHB][hapmap];0.83[CHD][hapmap]
rs11034602	0.83[CHB][hapmap];0.83[CHD][hapmap]
rs11034603	1.00[CEU][hapmap];0.87[CHB][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12576085	0.95[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap]
rs12577475	0.91[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs16906999	1.00[CEU][hapmap];0.82[JPT][hapmap];0.96[YRI][hapmap]
rs16907084	0.81[JPT][hapmap]
rs4910692	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs7109669	0.94[CEU][hapmap];0.80[CHB][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7932754	0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054847	chr11:4642875-5200656	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
2	esv2758254	chr11:4907893-5135331	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
3	esv2759799	chr11:4907893-5135331	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
4	nsv8781	chr11:4916743-4921311	Inactive region	TF binding region Chromatin interactive region	1 gene(s)	n/a	diseases
5	nsv896917	chr11:4917089-4935470	Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	nsv975826	chr11:4919908-4925361	Inactive region	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links