Variant report

Variant	rs11034573
Chromosome Location	chr11:4919979-4919980
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:4918642..4921294-chr11:5101983..5104188,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10500627	1.00[CEU][hapmap];0.87[CHB][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10500628	0.81[CHB][hapmap];0.83[CHD][hapmap];0.84[LWK][hapmap];0.93[MEX][hapmap];0.83[AMR][1000 genomes]
rs10500629	0.83[CHD][hapmap]
rs10500630	0.83[CHD][hapmap]
rs10742412	0.83[CHD][hapmap];0.84[LWK][hapmap]
rs10768355	0.83[CHD][hapmap]
rs10836914	1.00[ASW][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.87[TSI][hapmap];0.89[YRI][hapmap];0.93[ASN][1000 genomes]
rs10836927	0.95[CHB][hapmap];0.95[JPT][hapmap];0.89[YRI][hapmap]
rs10836931	0.87[CEU][hapmap];0.82[CHB][hapmap]
rs10836932	0.81[CHD][hapmap]
rs10836934	1.00[CEU][hapmap];0.87[CHB][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10836935	0.87[CEU][hapmap];0.82[CHB][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10836936	0.85[CEU][hapmap];0.80[CHB][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11034546	0.95[CHB][hapmap];0.95[JPT][hapmap];0.94[YRI][hapmap];0.93[ASN][1000 genomes]
rs11034554	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs11034574	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs11034596	1.00[CEU][hapmap];0.87[CHB][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11034602	1.00[CEU][hapmap];0.87[CHB][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11034603	0.82[CHB][hapmap];0.83[CHD][hapmap]
rs12576085	0.90[ASW][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.89[YRI][hapmap]
rs12577475	0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[YRI][hapmap];0.94[ASN][1000 genomes]
rs1368831	0.87[CEU][hapmap];0.82[CHB][hapmap]
rs16906999	0.82[JPT][hapmap]
rs16907084	0.81[JPT][hapmap]
rs4910692	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs7932754	0.90[JPT][hapmap]
rs9633907	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048224	chr11:4390227-4920324	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
2	nsv540917	chr11:4390227-4920324	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
3	nsv1054847	chr11:4642875-5200656	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
4	esv2758254	chr11:4907893-5135331	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
5	esv2759799	chr11:4907893-5135331	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
6	nsv8781	chr11:4916743-4921311	Inactive region	TF binding region Chromatin interactive region	1 gene(s)	n/a	diseases
7	nsv896917	chr11:4917089-4935470	Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
8	nsv975826	chr11:4919908-4925361	Inactive region	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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